Bra026145

Description : component *(SRP54) of SRP (signal recognition particle) complex

Gene families : OG0001207 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001207_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra026145
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_176

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	None	Extended
BP	GO:0006613	cotranslational protein targeting to membrane	None	Extended
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008312	7S RNA binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045047	protein targeting to ER	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
CC	GO:0048500	signal recognition particle	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070972	protein localization to endoplasmic reticulum	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004061	arylformamidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004664	prephenate dehydratase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006568	tryptophan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006569	tryptophan catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006586	indolalkylamine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006631	fatty acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009063	amino acid catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042180	cellular ketone metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042430	indole-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042436	indole-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046700	heterocycle catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070189	kynurenine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013822	Signal_recog_particl_SRP54_hlx	6	83
IPR000897	SRP54_GTPase_dom	101	296
IPR004125	Signal_recog_particle_SRP54_M	328	425

External Links

No external refs found!

Bra026145

Expression Profile

Co-expression Networks

Functional Annotation