Heatmap: Cluster_176 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000963 (MCTP9)
-2.05 -0.29 0.78 -2.16 0.35 0.79 -2.69 -4.66 -1.52 -0.82 -2.84 -0.96 -3.69 0.03 1.0 -1.21 -1.48 0.11 -2.0 -2.72 -2.44 -0.17 3.88 -2.02 -3.55 -2.85 -2.37 -2.33 -1.61 -0.34 -3.56
Bra002423 (ADT5)
-0.89 -0.61 -0.22 -0.76 -0.11 0.05 -0.62 -0.9 -0.15 -0.14 -0.27 -0.49 -0.68 0.22 0.68 0.11 -0.52 0.29 0.07 -0.11 -0.29 -0.26 2.28 -0.06 -0.32 -0.27 -0.34 -0.31 0.17 -0.02 -0.54
1.07 -2.24 -2.09 -2.25 1.32 -0.08 0.47 - -1.43 - - -3.61 -3.4 - - - -0.69 0.19 - - - - 4.33 -2.14 - -0.62 - - -3.4 - -
-2.08 -1.99 -3.14 -2.45 -0.6 0.87 -0.07 -1.16 -1.06 -0.89 -1.88 -0.84 -0.66 -0.08 0.06 -0.23 -0.81 1.14 -0.43 -0.77 -0.66 -0.78 3.55 -0.41 -0.71 -2.44 -0.39 -1.31 -0.85 -2.02 -1.17
Bra003724 (PBL31)
-0.59 -0.07 1.03 -0.85 1.01 1.13 -3.88 -2.41 -1.73 -2.52 -2.09 -1.97 -2.3 -0.22 0.36 -0.47 -1.63 0.49 -0.94 -0.63 -1.45 -1.67 3.74 -2.2 -2.87 -3.71 -5.3 -1.41 -3.46 -1.51 -5.08
Bra005027 (BIK1)
-1.24 -0.72 -0.38 -1.05 0.16 0.42 -2.16 -3.24 -1.44 -1.63 -1.98 -2.11 -1.31 -0.07 0.34 -1.68 -1.56 0.82 -0.59 -1.41 -1.82 -1.67 3.72 -0.66 -1.35 -1.26 -2.08 0.07 0.25 -0.6 -1.74
Bra006449 (ANAC087)
-1.43 -1.76 -0.82 -1.83 -0.3 0.98 -0.37 -1.8 -0.71 -0.77 -1.42 -0.97 -0.51 0.15 0.52 0.07 -0.45 0.14 -1.07 -0.27 -0.56 -1.22 3.43 -1.26 -1.13 -0.96 -0.82 -0.5 -0.51 -0.99 -1.52
0.32 -3.64 -0.37 -4.08 0.84 1.63 -3.11 -1.68 -3.15 -3.99 - - -0.56 -2.87 -1.4 -2.14 -3.91 -0.81 -4.22 -0.44 -1.62 -3.03 4.21 - -3.94 -2.4 -1.95 -1.81 - -1.4 -1.34
Bra009036 (PICALM10b)
-0.75 -0.71 -0.17 -2.45 -0.11 0.42 -2.73 -2.62 -1.84 -1.59 -1.16 -2.54 -2.52 -2.4 0.06 -1.53 -1.14 0.59 -1.07 -1.81 -2.74 0.66 3.8 -1.03 -0.95 -0.98 -0.84 -0.8 -0.96 -0.15 -0.38
Bra009925 (CBP60G)
-0.28 0.29 0.25 -0.95 0.14 0.97 -0.9 -1.73 -0.62 -0.66 -0.84 -0.77 -1.78 0.06 0.48 -0.52 -1.13 -0.57 -0.44 -0.41 -0.82 -0.01 3.23 -1.13 -1.27 -1.5 -1.26 -1.4 -0.64 -0.31 -1.25
-0.15 0.27 0.5 -0.29 0.55 0.48 -0.58 -1.07 -0.28 -0.29 -0.91 -0.79 -1.31 0.09 0.42 -0.36 -0.6 -0.28 -0.46 -0.51 -0.33 -0.34 2.6 -0.82 -0.74 -0.01 -0.74 -0.39 0.17 -0.68 -1.03
Bra013669 (UTR2)
-1.35 -0.93 -1.07 -1.79 0.04 1.16 -1.3 -2.73 -0.67 -1.0 -0.98 -1.05 -1.55 0.23 0.51 -0.81 -1.26 -0.03 -1.09 -1.34 -1.16 -0.58 3.2 0.4 0.01 -0.96 -0.26 0.09 0.27 -0.28 -0.8
-0.1 0.25 -0.18 -1.18 0.85 0.73 -3.01 -3.55 -0.85 -0.84 -1.34 -0.92 -3.13 -0.13 0.05 -1.66 -1.61 -0.34 -0.85 -2.01 -1.4 -0.38 3.52 -0.81 -1.44 -0.7 -1.24 -0.76 -0.01 0.08 -1.83
Bra014237 (RLP31)
-1.76 -1.23 -1.57 -2.55 1.09 0.95 -2.76 -2.48 -1.67 -0.38 -1.33 -0.68 -1.26 -0.05 0.45 -0.52 -0.55 -0.68 -0.47 -1.12 -1.13 0.36 3.62 -1.49 -1.18 -1.35 -1.44 -0.79 -1.08 -1.05 -1.93
-2.17 0.18 0.16 -1.96 -0.09 0.17 -4.28 -2.25 -1.07 -0.99 -1.67 -0.84 -2.29 0.23 0.61 -1.72 -2.33 -0.27 -1.82 -1.3 -1.31 -1.75 3.69 -0.85 -0.54 -0.78 -3.89 -0.13 -0.12 0.64 -1.92
-1.81 -0.04 1.42 -1.02 -0.76 -0.17 -2.3 -1.8 -4.03 -1.38 -2.03 -1.31 -2.34 -2.72 -0.44 0.4 -1.12 -1.53 -1.55 -1.3 -3.95 0.77 4.1 -3.28 -3.53 -3.27 -3.86 -5.29 -5.49 -2.17 -5.37
-3.26 -1.14 -1.19 -2.54 0.79 0.34 -2.67 -3.56 -1.28 -0.12 -1.41 -1.33 -1.39 -0.18 1.07 -0.26 -0.66 0.76 -1.14 -0.99 -1.25 -1.22 3.82 -1.23 -2.28 -3.12 -2.95 -1.93 -2.24 -1.6 -1.33
Bra015704 (TOL4)
-1.11 0.13 -0.08 -0.97 0.17 0.59 -0.67 -1.17 -0.17 -0.47 -0.53 -0.13 -0.81 0.17 0.74 -0.06 -0.16 0.31 -0.39 -0.55 -0.66 -0.23 2.4 -0.31 -0.26 -0.44 -0.37 -0.41 -0.29 0.07 -0.67
-2.43 0.19 0.1 -2.65 0.21 1.14 -1.47 -3.18 -1.28 -0.08 -1.53 -0.9 -3.64 0.18 0.91 -0.19 -0.81 -1.55 -1.29 -1.69 -1.53 0.48 3.64 -1.36 -1.47 -4.2 -1.25 -1.26 -1.07 -1.39 -4.96
-3.24 -1.64 -1.35 -5.88 1.23 0.71 -2.5 -3.67 -0.84 -1.39 -2.27 -1.58 -1.4 1.18 0.69 -1.39 -1.74 0.78 -1.25 -2.1 -1.67 -0.96 3.57 -0.97 -1.71 -0.92 -2.05 -1.15 0.02 -0.43 -0.62
-1.47 1.09 0.94 -1.27 0.46 0.52 -2.81 -2.91 -1.76 -1.37 -1.95 -1.04 -4.19 0.39 1.21 -1.33 -0.47 0.43 -1.53 -2.44 -3.81 -0.1 3.62 -2.15 -3.61 -3.5 -3.32 -3.07 -1.69 -0.83 -2.26
-0.64 -0.38 0.62 -1.43 0.3 0.45 -0.68 -1.01 -0.4 -0.7 -1.34 -1.18 -1.08 0.57 0.26 -0.64 -0.36 -0.12 -0.56 -0.08 -0.87 -0.81 3.0 -0.24 -0.52 -0.76 -0.74 -0.23 -0.24 -0.78 -1.0
Bra020546 (WRKY50)
-1.16 0.18 -1.06 -4.32 -0.05 0.62 -1.18 -2.13 -0.22 0.08 -1.39 -1.13 -1.36 0.3 0.05 0.02 -0.63 1.43 -0.51 -0.8 -0.84 0.18 3.46 -1.06 -1.38 -3.62 -2.55 -1.46 -2.51 -2.02 -4.57
Bra020591 (CNI1)
-2.25 0.52 1.05 -3.73 -0.47 -0.41 -3.52 -4.41 -2.79 -0.74 -3.06 -1.88 -3.68 -1.1 -0.58 -1.06 -1.41 0.09 -3.24 -2.22 -3.31 -0.19 4.19 -2.44 -2.22 -2.26 -3.15 -2.61 -1.98 -1.04 -2.85
Bra020705 (BIR1)
-1.26 -0.53 0.36 -1.7 0.46 0.86 -1.17 -1.74 -0.83 -0.38 -1.18 -0.87 -1.41 -0.01 0.46 0.05 0.19 0.29 -0.73 -0.49 -1.07 0.02 2.77 -0.16 -0.67 -0.03 -0.6 -0.47 -0.35 0.12 -0.99
-0.53 -0.14 -0.32 -0.32 0.62 0.31 -0.17 -0.36 -0.71 -0.61 -0.84 -0.73 0.29 0.36 0.22 -0.16 -0.4 0.12 -0.57 -0.64 -0.89 -0.31 2.5 -0.41 -0.58 -0.44 -0.67 -0.15 -0.23 -0.11 -0.45
-0.61 0.42 0.95 -2.25 -0.3 0.12 -2.55 - -1.59 -0.77 -1.49 -0.97 -3.81 0.46 -0.21 -1.41 -0.4 0.63 -1.29 -2.11 -1.5 -0.61 3.82 -1.73 -2.59 -3.44 -1.47 -1.38 -1.97 -0.67 -3.76
- -1.2 0.69 -0.18 - 1.18 -2.89 -2.37 - - - -0.35 - -1.41 -0.04 -0.05 0.64 0.65 -1.28 - - 0.39 4.08 - - - - -2.27 -2.42 -2.44 -
-0.85 0.11 0.11 -1.3 0.02 0.53 -1.88 -2.59 -0.8 -0.23 -1.18 -1.28 -0.65 0.46 0.13 -0.93 -0.4 1.5 -1.07 -2.01 -1.19 -0.66 3.39 -2.04 -2.57 0.05 -1.74 -1.34 -1.01 -1.58 -2.2
-0.43 0.49 0.18 -0.57 0.48 0.54 -1.09 -1.42 -0.85 -0.87 -0.98 -0.79 -0.86 0.55 0.26 -0.33 -0.91 0.14 -0.85 -0.86 -0.77 -0.34 2.91 -0.81 -0.78 -0.17 -1.19 -0.85 -0.61 0.33 -0.73
-1.14 0.42 -0.92 -1.9 0.33 -0.39 -1.91 -2.74 -0.59 -0.32 -1.31 -0.71 -1.0 0.75 1.05 -0.25 -0.87 0.66 -0.2 -1.44 -0.76 -1.37 3.34 -1.5 -1.46 -1.08 -1.4 -0.67 -0.85 -0.52 -1.15
Bra026515 (ALA10)
-1.02 -0.04 0.24 -1.94 0.69 0.44 -1.78 -2.08 -0.71 -0.74 -1.73 -1.11 -2.27 0.76 0.56 -0.7 -0.98 1.03 -0.53 -1.09 -1.95 -1.16 3.5 -2.23 -2.34 -1.9 -1.94 -1.2 -0.7 -0.69 -1.66
-0.37 -0.2 0.02 -0.04 0.76 0.44 -0.88 -1.08 -0.64 -0.46 -0.93 -0.47 -0.43 0.09 0.23 -0.49 -0.59 0.25 -0.78 -0.79 -0.54 -0.58 2.86 -0.66 -0.65 -0.24 -0.87 -0.92 -0.52 -0.22 -0.72
Bra027252 (PFU1)
-0.51 -1.09 -0.29 -1.25 0.32 0.39 -1.66 -1.95 -0.91 -0.74 -0.52 -0.67 -1.27 -0.08 0.65 -0.77 -0.66 -0.41 -0.88 -0.85 -1.66 -0.13 2.77 0.29 -0.13 -0.41 0.02 0.29 0.43 0.5 0.08
-0.8 -0.26 0.16 -1.16 0.45 0.42 -1.09 -1.78 -0.42 -0.48 -0.6 -0.52 -1.17 0.66 1.03 -0.43 -0.42 0.75 -0.53 -0.84 -0.97 -0.57 3.01 -0.99 -1.17 -1.56 -1.53 -0.65 -0.68 -0.35 -1.58
Bra027700 (LACS3)
-0.29 0.82 1.09 -1.79 1.33 0.73 -1.37 -2.08 -0.95 -0.64 -2.17 -1.72 -1.42 -0.47 0.26 -0.69 -0.44 0.76 -0.87 -1.43 -3.1 -0.97 3.56 -4.66 -2.54 -3.7 -3.13 -2.8 -2.39 -4.1 -6.17
Bra028707 (WRKY26)
-1.62 0.12 1.03 -1.65 0.63 0.21 -2.12 -2.85 -0.55 -0.66 -1.1 -0.37 -2.77 -0.02 -0.14 -1.01 -1.5 -0.6 -0.95 -1.01 -1.36 -0.04 3.53 -0.64 -1.9 -2.2 -1.55 -0.68 -0.2 -0.12 -1.86
Bra029278 (CXE20)
-1.38 -1.0 -1.22 -2.82 1.03 0.89 -1.12 -3.47 -1.42 -1.35 -2.62 -1.43 -2.08 0.4 0.13 -1.38 -1.91 0.8 -0.84 -2.42 -2.31 -0.84 3.84 -1.1 -1.23 -2.79 -1.52 -1.34 -0.93 -1.39 -1.88
-0.68 -0.59 -1.14 -1.4 0.68 1.35 -1.95 -1.54 -0.95 -0.42 0.18 -0.9 -0.8 -0.35 0.45 -0.74 -1.63 -0.65 0.05 -0.67 -0.44 -0.66 3.09 -0.6 -0.25 -1.08 -1.16 -0.25 -0.1 -0.39 -1.43
-1.6 -0.26 0.24 -2.27 0.79 0.33 -2.01 -5.77 -2.03 -1.45 -1.93 -1.36 -2.54 0.7 0.73 -1.4 -1.24 0.76 -3.02 -1.66 -1.84 -0.54 3.88 -2.39 -1.8 -3.06 -3.19 -2.16 -1.93 -1.56 -1.83
Bra032174 (WRKY15)
-0.6 0.27 0.72 -0.4 0.69 0.27 -1.65 -1.84 -0.68 -0.58 -1.04 -0.59 -0.65 0.86 0.3 -0.67 -0.77 0.87 -0.65 -0.83 -0.9 -0.55 2.97 -1.28 -1.4 -1.13 -1.8 -1.13 -0.75 -0.1 -1.42
Bra035198 (PP2-B11)
-1.03 -0.75 -0.79 -1.58 -0.4 0.36 -1.75 -2.03 -0.41 -0.26 -0.43 -0.76 -0.56 0.45 0.15 -0.34 -0.99 0.57 -0.2 -0.45 -0.91 -0.09 3.6 -0.85 -1.31 -1.82 -1.44 -1.48 -2.43 -3.56 -2.72
Bra036563 (WRKY50)
-3.8 -2.74 -1.69 - 1.33 0.69 -1.74 -2.95 - -0.83 -4.25 -1.66 -1.52 -0.38 1.18 -1.51 -1.32 0.07 -2.89 -2.96 -2.99 -0.48 4.15 -3.12 - -2.46 -4.05 -1.92 -3.98 -2.36 -3.85
-5.12 -3.67 -4.11 -6.12 -1.09 -0.42 -3.85 -5.05 -3.13 -2.96 -4.98 -3.82 -2.69 1.06 1.03 -2.48 -2.93 0.98 -3.21 -3.19 -3.49 -2.51 4.43 -3.81 -4.43 -4.56 -4.54 -3.23 -3.65 -4.35 -4.46
Bra037811 (SUPA)
-2.26 -1.06 -0.5 -1.44 -0.65 0.17 -2.95 -3.56 -1.97 -1.55 -2.45 -2.38 -2.33 0.8 0.8 -1.46 -1.93 0.85 -0.99 -1.03 -2.62 -1.16 4.0 -1.77 -2.83 -1.81 -2.49 -2.19 -0.9 -0.4 -2.29
- -0.18 1.7 - 0.11 - - - - - - - - - - - - 1.62 - - - -0.77 4.47 - - - - - - - -
Bra038509 (NIC1)
-1.09 0.11 0.02 -1.02 0.42 0.52 -0.75 -1.29 -0.61 0.05 -1.07 -0.26 -0.57 0.38 0.5 -0.33 -0.76 0.35 -1.02 -1.11 -0.77 -0.49 3.01 -0.85 -1.41 -0.5 -0.81 -1.23 -0.42 -0.24 -0.81
0.14 0.72 0.76 -0.0 0.66 0.21 -1.23 -1.75 -0.66 -0.76 -0.72 -0.38 0.0 -0.17 0.23 -0.39 -1.01 0.53 -0.83 -1.69 -1.57 -0.31 3.38 -2.8 -3.71 -2.04 -2.84 -3.54 -2.88 -1.83 -2.51
Bra038824 (BIR1)
-1.05 -0.16 0.18 -1.37 0.73 0.89 -1.2 -1.81 -1.04 -0.87 -1.36 -0.73 -1.81 0.4 0.61 -0.14 -0.23 0.42 -0.45 -1.06 -0.81 -0.18 2.92 -0.76 -1.16 0.07 -1.17 -0.59 -0.29 0.09 -1.73
Bra039027 (ALA10)
-3.15 0.24 1.0 -3.32 0.52 0.39 -2.01 -3.64 -0.7 -11.66 -1.4 -2.13 -1.77 -0.49 0.42 -0.51 -1.63 0.64 -0.38 -1.39 -0.88 -0.04 3.73 -1.44 -1.82 -1.84 -2.13 -1.01 -1.78 -1.77 -2.53
0.57 0.95 0.75 -0.25 0.61 0.65 -0.8 -0.74 -0.78 -0.46 -1.38 -1.02 -0.87 0.17 -0.18 -1.0 -0.61 -0.54 -0.54 -1.03 -1.24 -0.54 3.19 -1.83 -1.64 -2.15 -1.94 -1.23 -1.17 -1.09 -1.44
Bra039706 (KMS1)
-0.13 0.23 0.24 -0.31 0.53 0.46 -0.43 -0.49 -0.3 -0.33 -0.29 -0.35 -0.45 0.37 0.53 -0.05 -0.44 0.02 -0.2 -0.56 -0.77 -0.27 2.24 -0.47 -0.45 -0.73 -0.52 -0.53 -0.44 -0.33 -0.7
Bra040557 (WRKY45)
-0.91 -0.76 -0.34 -1.22 0.24 0.47 -0.93 -0.82 -1.41 -0.83 -0.8 -0.54 -0.34 0.57 0.83 -0.29 -0.67 0.48 -0.93 -0.62 -0.54 -0.55 2.88 0.13 -0.65 -0.48 -0.97 -0.15 -0.29 -0.6 -0.61
-1.17 0.21 0.26 -1.2 0.16 0.28 -1.31 -1.14 -0.41 -0.39 -0.91 -0.66 -0.69 0.4 0.86 -0.04 -0.16 1.04 -0.14 -0.61 -0.64 0.16 2.96 -1.2 -1.46 -1.34 -1.23 -1.77 -1.35 -1.12 -1.6

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.