- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : L18aB, RPL18aB
Description : component *(eL20) of large ribosomal-subunit (LSU) proteome
Gene families : OG0001499 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001499_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra021915 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_20 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bra005421 | L18aB, RPL18aB | component *(eL20) of large ribosomal-subunit (LSU) proteome | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Bra022978 | L18aB, RPL18aB | component *(eL20) of large ribosomal-subunit (LSU) proteome | 0.06 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Lsat_1_v5_gn_7_30180.1 | L18aB, RPL18aB | component *(eL20) of large ribosomal-subunit (LSU) proteome | 0.12 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Mp1g17730.1 | L18aB, RPL18aB | component *(eL20) of large ribosomal-subunit (LSU) proteome | 0.05 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003743 | translation initiation factor activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004055 | argininosuccinate synthase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005737 | cytoplasm | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006525 | arginine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006526 | arginine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008097 | 5S rRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016571 | histone methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019843 | rRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034968 | histone lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0045182 | translation regulator activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR023573 | Ribosomal_eL20_dom | 7 | 128 |
| No external refs found! |