Bra012871 (NERD1)

Aliases : NERD1

Description : regulatory protein *(NERD1) of exocytic trafficking. transcription factor *(A/B-GATA)

Gene families : OG0013989 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra012871
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_211

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003684	damaged DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004356	glutamine synthetase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004357	glutamate-cysteine ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006541	glutamine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006542	glutamine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016211	ammonia ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043085	positive regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044093	positive regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0110154	RNA decapping	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0110156	methylguanosine-cap decapping	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	928	962

External Links

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Bra012871 (NERD1)

Expression Profile

Co-expression Networks

Functional Annotation