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  5. Spov3_chr6.01742

Spov3_chr6.01742 (UBP12, AtUBP12)


Aliases : UBP12, AtUBP12

Description : deubiquitinase *(UBP12-13). deubiquitinase *(UBP12-13)


Gene families : OG0000537 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Spinacia oleracea (Sol) PCC: Spov3_chr6.01742
Cluster Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Bra001426 UBP13, AtUBP13 deubiquitinase *(UBP12-13). deubiquitinase *(UBP12-13) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_0_20981.1 UBP12, AtUBP12 deubiquitinase *(UBP12-13). deubiquitinase *(UBP12-13) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005049 nuclear export signal receptor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006886 intracellular protein transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0006904 vesicle docking involved in exocytosis IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008104 protein localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0009966 regulation of signal transduction IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0010646 regulation of cell communication IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0015031 protein transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016197 endosomal transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0016482 cytosolic transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0022406 membrane docking IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0023051 regulation of signaling IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030117 membrane coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030118 clathrin coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030120 vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030125 clathrin vesicle coat IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0030132 clathrin coat of coated pit IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030234 enzyme regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0030695 GTPase regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0032012 regulation of ARF protein signal transduction IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0033036 macromolecule localization IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035091 phosphatidylinositol binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0042147 retrograde transport, endosome to Golgi IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0045184 establishment of protein localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046578 regulation of Ras protein signal transduction IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0046907 intracellular transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048278 vesicle docking IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051179 localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051640 organelle localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051641 cellular localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0051649 establishment of localization in cell IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0070727 cellular macromolecule localization IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071702 organic substance transport IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0098772 molecular function regulator activity IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Spinacia oleracea GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0140029 exocytic process IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:0140056 organelle localization by membrane tethering IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140097 catalytic activity, acting on DNA IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140142 nucleocytoplasmic carrier activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Spinacia oleracea GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Spinacia oleracea GO terms from Neighborhoods
BP GO:1902531 regulation of intracellular signal transduction IEP Spinacia oleracea GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR024729 USP7_ICP0-binding_dom 623 875
IPR002083 MATH/TRAF_dom 60 180
IPR001394 Peptidase_C19_UCH 198 519
IPR029346 USP_C 885 1095
No external refs found!