Spov3_chr6.00433

Description : glutamate-tRNA ligase

Gene families : OG0064816 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr6.00433
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_1

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016192	vesicle-mediated transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030118	clathrin coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030125	clathrin vesicle coat	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030132	clathrin coat of coated pit	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032977	membrane insertase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140597	protein carrier chaperone	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020058	Glu/Gln-tRNA-synth_Ib_cat-dom	222	524
IPR020059	Glu/Gln-tRNA-synth_Ib_codon-bd	530	706
IPR004046	GST_C	102	157

External Links

No external refs found!

Spov3_chr6.00433

Expression Profile

Co-expression Networks

Functional Annotation