Spov3_chr5.00877 (ATLIG1, LIG1)

Aliases : ATLIG1, LIG1

Description : DNA replication DNA ligase *(LIG1). EC_6.5 ligase forming phosphoric ester bond. DNA ligase *(LIG1)

Gene families : OG0072109 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr5.00877
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_122

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000151	ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003689	DNA clamp loader activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004055	argininosuccinate synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004743	pyruvate kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005663	DNA replication factor C complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005680	anaphase-promoting complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006298	mismatch repair	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006525	arginine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006526	arginine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030955	potassium ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030983	mismatched DNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031420	alkali metal ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043138	3'-5' DNA helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140612	DNA damage sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012310	DNA_ligase_ATP-dep_cent	473	677
IPR012308	DNA_ligase_ATP-dep_N	233	408
IPR012309	DNA_ligase_ATP-dep_C	702	813

External Links

No external refs found!

Spov3_chr5.00877 (ATLIG1, LIG1)

Expression Profile

Co-expression Networks

Functional Annotation