Bra010689 (CLS8, RNR1, DPD2, ATRNR1, R1)

Aliases : CLS8, RNR1, DPD2, ATRNR1, R1

Description : EC_1.17 oxidoreductase acting on CH or CH2 group. large subunit of ribonucleoside-diphosphate reductase heterodimer

Gene families : OG0000947 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra010689
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_189

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_C0166.00001	CLS8, RNR1,...	EC_1.17 oxidoreductase acting on CH or CH2 group. large...	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	None	Extended
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003896	DNA primase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004820	glycine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006426	glycyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0042555	MCM complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044092	negative regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051095	regulation of helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051097	negative regulation of helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905774	regulation of DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000788	RNR_lg_C	216	757
IPR005144	ATP-cone_dom	1	89
IPR013509	RNR_lsu_N	142	212

External Links

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Bra010689 (CLS8, RNR1, DPD2, ATRNR1, R1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation