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Heatmap: Cluster_189 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
Bra000520 (CYL2)
 -1.54 -0.65 0.18 -0.13 -0.91 -1.54 -1.03 -0.33 -0.91 -0.21 0.21 0.03 1.93 -1.78 -1.22 0.34 0.01 0.45 -0.35 -0.3 0.42 0.08 0.93 -0.03 -0.06 0.31 0.15 -0.09 -0.61 -0.24 0.52
Bra002523 (HTA6)
 -1.4 -1.06 -0.44 -0.34 -0.7 -2.02 -0.82 -1.11 -0.49 0.17 -0.34 -0.57 2.03 -1.62 -1.78 0.2 0.25 0.64 -1.27 -0.61 -0.12 0.04 1.88 0.52 0.11 0.46 0.1 -0.06 -0.92 -0.47 -0.05
Bra003096 (ATIM)
 -1.09 -0.88 -0.69 -0.62 -0.66 -0.31 0.35 -0.01 -0.81 -0.16 0.14 -0.26 1.08 -0.93 -0.39 0.68 0.14 0.5 -0.4 0.37 0.36 0.22 1.2 -0.19 -0.0 -0.12 -0.12 0.06 -0.99 -0.71 0.5
Bra003150 (HTB6)
 -1.17 -1.99 -0.72 -0.63 -0.63 -0.58 -0.04 -0.35 -0.63 0.39 0.2 0.66 2.03 -0.74 -0.62 0.64 -0.1 0.13 -0.77 -0.25 0.58 0.1 0.96 -0.15 -0.13 -0.54 -0.07 -0.17 -0.93 -0.34 -0.44
Bra004213 (DDR3)
 -0.31 -0.42 -0.5 -0.86 0.15 0.12 -0.23 -0.59 -0.87 0.0 -0.34 -0.36 1.8 -0.36 -0.59 0.33 -0.12 0.61 -1.08 -0.34 -0.22 0.39 0.92 0.05 -0.06 -0.16 0.02 -0.14 -0.29 -0.39 0.03
Bra005184 (ORC2)
 -2.13 -0.49 0.5 -0.28 -1.24 -1.56 -0.36 -0.32 -1.49 -0.19 0.29 -0.09 1.98 -2.24 -1.64 0.72 0.7 0.87 -1.28 -1.27 0.17 0.55 1.11 -0.06 -0.54 -0.1 -0.16 0.12 -1.41 -0.76 0.52
Bra005880 (CYCB1;2)
 -1.78 -2.23 -0.71 -2.02 -0.9 -2.24 -1.22 -0.92 -0.54 -0.28 -0.87 -1.37 2.5 -0.82 -0.48 0.57 -0.51 1.23 -1.41 -0.77 -0.97 -1.36 1.84 0.29 0.18 -0.53 0.06 0.28 -0.36 0.01 0.56
Bra006688 (HTA6)
 -0.82 -0.65 0.3 -0.08 -0.41 -1.14 -0.55 -1.07 -0.66 -0.02 -0.28 -0.2 1.87 -1.33 -1.45 0.32 -0.13 0.78 -1.09 -0.52 0.05 0.36 1.06 0.2 -0.11 0.61 0.03 0.19 -0.61 -0.33 -0.25
-2.71 -0.95 -1.15 -1.19 -0.63 -2.71 -1.03 -1.23 -0.58 -0.34 -0.77 -0.17 1.81 -3.39 -2.18 0.04 -0.11 0.72 -1.42 -0.01 0.27 -0.01 1.73 0.75 0.66 0.39 0.5 0.12 0.02 0.41 0.09
Bra007080 (HTA11)
 -1.78 -0.82 -0.82 -1.63 -0.91 -1.45 -0.96 -1.63 -1.16 -0.72 -0.85 -0.77 2.18 -1.33 -1.57 -0.3 -0.3 0.9 -1.51 -0.56 -0.76 -0.17 1.87 0.41 0.16 0.68 0.14 0.58 -0.03 0.05 0.78
-0.91 0.37 0.82 0.09 -1.0 -1.49 -1.67 -0.29 -0.74 0.01 0.01 -0.03 1.5 -1.27 -0.97 -0.9 -0.41 0.74 -1.48 -0.18 -0.22 0.07 2.0 -0.15 -0.02 0.22 -0.63 -0.6 -1.61 -0.07 0.33
Bra008604 (ORC3)
 -1.17 -0.53 0.03 -0.47 -0.95 -1.87 -1.01 -0.16 -0.9 0.38 -0.25 -0.24 2.02 -1.43 -1.86 0.55 -0.04 0.96 -1.16 -0.96 -0.12 -0.34 2.01 -0.16 -0.43 0.14 -0.48 -0.42 -1.99 -0.39 0.5
Bra008860 (ABAP1)
 -1.78 -0.06 0.29 0.07 -0.73 -1.03 -0.49 -0.99 -0.31 0.44 -0.09 -0.03 2.24 -0.51 -0.65 0.44 0.63 0.45 -0.63 -0.81 -0.04 -0.02 0.85 -0.24 -0.9 -0.32 -0.39 -0.25 -1.89 -0.73 0.17
Bra010689 (R1)
 -0.52 0.14 0.22 0.52 -0.86 -1.6 -0.36 -0.52 -1.09 -0.15 -0.55 -0.25 1.72 -1.43 -0.81 0.17 0.08 0.54 -1.3 -0.85 -0.25 -0.39 1.55 -0.12 -0.04 0.43 0.18 0.25 -1.06 -0.38 0.24
-1.58 -0.64 -0.71 -1.06 -0.25 -0.8 -0.1 -0.17 -0.88 -0.19 -0.41 -0.46 1.91 -0.46 -0.37 0.27 0.03 1.08 -0.56 -0.34 -0.1 0.07 1.51 0.21 -0.01 -0.57 -0.05 -0.79 -0.77 -0.19 0.1
Bra012132 (ICU2)
 -0.76 -0.13 0.08 0.17 -0.81 -1.61 -0.3 -0.55 -0.85 0.09 -0.16 0.06 1.84 -1.8 -1.63 0.12 0.24 0.89 -1.15 -0.6 -0.27 0.07 1.19 -0.01 -0.24 0.15 0.13 -0.21 -1.27 -0.26 0.7
Bra013169 (MCM5)
 -1.06 0.24 0.7 0.28 -1.55 -2.16 -0.23 -0.6 -0.78 -0.17 0.34 0.01 1.67 -2.27 -2.37 0.51 0.4 0.72 -1.12 -0.64 -0.33 -0.06 1.08 -0.01 -0.12 0.21 0.06 -0.09 -1.64 -0.29 0.62
Bra013232 (CDC45)
 -1.49 -0.29 0.5 -0.41 -0.53 -0.55 -0.64 -1.1 -0.33 -0.15 -0.59 -0.21 1.6 -1.05 -0.93 -0.04 -0.57 1.16 -1.32 -0.73 -0.2 -0.39 1.81 0.06 0.02 0.11 -0.06 -0.71 -0.54 0.23 0.38
Bra014835 (CDC2B)
 -0.58 -1.52 -0.08 -0.67 -0.82 -2.78 -0.89 -0.98 -0.66 0.02 -0.34 -0.92 2.37 -1.02 -0.5 -0.08 0.11 0.64 -1.06 -0.29 -0.75 -0.29 1.49 -0.38 0.47 -0.05 -0.01 0.04 -0.4 0.26 0.17
-0.49 0.17 1.07 0.6 -1.78 -2.99 -0.78 -0.88 -1.11 -0.03 -0.59 -0.21 1.89 -2.47 -3.57 0.15 0.13 0.55 -1.94 -1.27 -0.61 -0.38 0.78 0.12 0.15 1.16 0.36 0.06 -1.63 -0.15 0.67
-1.11 0.41 0.88 0.18 -1.52 -2.48 -0.3 -0.38 -0.64 0.5 -0.38 0.15 2.02 -1.78 -1.87 0.63 0.62 0.51 -1.17 -0.24 -0.39 -0.16 0.87 -0.69 0.06 -0.31 -0.3 -0.37 -1.07 -0.5 0.08
Bra016985 (ETG1)
 -1.06 0.06 0.48 0.32 -1.52 -2.2 -0.43 -0.42 -0.89 0.03 0.05 -0.16 2.11 -2.57 -2.57 0.39 0.2 0.56 -1.37 -0.58 -0.03 0.19 1.31 -0.53 0.22 0.24 -0.2 -0.7 -1.95 -0.58 0.67
Bra018272 (CDT1)
 -2.54 -1.04 -0.07 -2.17 -0.54 -2.65 -0.07 -0.38 -0.54 0.17 -0.17 -0.48 2.11 -1.35 -0.99 0.56 0.16 1.41 -0.7 -0.26 -0.06 0.03 1.24 0.35 -0.01 -0.54 -0.14 0.01 -1.78 -0.18 -0.15
Bra020275 (HTB4)
 -2.04 -1.84 -1.01 -2.48 -0.47 -1.83 -0.37 -0.57 -1.33 -0.84 -0.68 -0.82 2.54 -1.19 -2.94 -0.41 0.21 1.03 -0.9 -0.45 -0.7 -0.7 2.01 -0.31 0.07 -0.02 0.15 0.33 -0.05 -0.16 0.38
Bra020278 (HTA6)
 -2.46 -0.95 -0.9 -0.29 -0.76 -1.87 -0.59 -0.94 0.32 0.51 -0.53 -0.61 1.98 -1.05 -0.18 0.46 0.58 0.65 -0.7 -0.68 -0.22 -0.08 1.21 0.32 0.11 0.02 0.08 0.15 -0.42 -0.49 -0.35
-2.01 -1.74 -1.14 -2.03 -1.26 -2.23 -0.87 -0.78 -0.3 0.57 -0.87 -1.18 2.07 -1.46 -0.58 0.11 0.48 0.73 -0.92 -0.66 -0.95 0.15 1.72 0.76 0.55 0.19 0.35 0.14 -0.56 -0.49 0.27
Bra020707 (H3.1)
 -2.2 -2.01 -0.94 -1.66 -0.92 -1.87 -0.31 -1.14 -0.29 0.03 -0.09 -0.44 2.48 -1.11 -0.6 0.01 0.05 0.93 -0.78 -0.28 -0.46 0.74 1.44 0.19 0.08 -0.24 -0.19 -0.21 -0.51 -0.42 -0.48
Bra022350 (TSK)
 -0.68 -0.14 0.1 -0.11 -0.33 -1.01 -0.51 -0.63 -0.87 0.48 0.18 0.07 1.36 -0.82 -0.63 0.59 -0.13 0.86 -0.99 -0.15 -0.5 -0.12 1.35 -0.27 -0.21 -0.16 -0.09 -0.09 -1.07 -0.21 0.39
Bra023389 (ABAP1)
 -1.38 -0.78 0.94 0.28 -1.35 -3.15 -0.78 -1.36 -0.27 0.19 -0.14 0.17 2.29 -3.02 -1.79 0.21 0.19 0.46 -0.75 -0.59 -0.08 0.1 1.27 -0.49 -0.21 0.5 -0.7 0.1 -1.83 -1.14 0.41
Bra023689 (CHR17)
 -1.09 -0.18 -0.21 -0.0 -2.35 -2.18 0.09 -0.39 -0.52 0.77 0.07 0.38 2.22 -2.72 -1.64 0.7 0.36 0.97 -1.25 -0.09 -0.38 0.65 -0.16 0.1 -0.14 0.14 -0.36 -1.11 -3.26 -0.94 0.29
Bra023937 (HTA13)
 -2.52 -1.21 -0.17 -0.47 -0.76 -2.08 -0.23 -0.64 -0.48 0.11 -0.05 -0.12 2.31 -1.55 -1.74 -0.1 0.41 1.0 -0.9 -0.48 -0.06 -0.2 1.25 0.41 -0.12 0.06 0.12 -0.15 -0.85 -0.38 -0.21
Bra024316 (FAS2)
 -0.97 -1.22 -0.17 -0.79 -0.14 -0.65 -0.21 -0.41 -0.29 0.02 0.11 -0.04 1.5 -0.39 -0.02 0.79 0.21 0.86 -0.47 -0.27 -0.48 0.07 0.8 -0.24 -0.09 -0.35 0.15 0.0 -0.78 -0.4 0.26
-1.49 -0.72 0.31 0.04 -0.54 -0.57 -0.23 -0.63 -0.28 0.53 0.07 0.35 2.36 -1.26 -0.24 0.92 0.14 0.9 -0.35 -0.62 -0.19 0.65 0.69 -0.89 -0.35 -1.99 -1.03 -0.71 -3.85 -1.54 -1.07
Bra025458 (POLA3)
 -0.42 -0.02 0.26 -0.03 -1.13 -2.07 -0.2 0.1 -0.24 -0.25 -0.24 0.3 2.18 -2.1 -1.19 0.22 0.36 0.89 -1.51 -0.58 0.01 -0.13 1.29 -0.32 -0.68 0.05 -0.61 -0.28 -1.76 -0.8 -0.03
-1.05 -1.52 -0.11 -2.1 0.29 -0.78 -0.98 -1.24 -0.9 -0.58 -0.53 -0.63 2.25 -0.43 -0.73 0.28 0.19 0.95 -0.98 -0.54 -1.64 -1.35 1.08 0.17 0.62 0.4 -0.17 -0.0 0.09 0.19 0.29
-1.99 -2.2 -1.1 -1.29 -1.79 -1.83 -0.97 -0.6 -1.27 -1.37 -0.47 -0.1 2.22 -2.46 -3.72 -0.25 0.1 0.88 -1.64 -0.62 -0.18 0.49 1.34 0.64 0.54 0.61 0.7 0.66 -0.73 -1.13 1.14
-2.05 -0.6 -0.39 -0.23 -0.88 -1.28 -0.32 -0.51 -0.34 0.3 0.11 0.18 2.13 -1.66 -0.65 0.25 0.11 0.6 -0.55 0.3 0.55 0.99 0.96 -0.61 -0.44 0.05 -0.39 -0.27 -2.17 -1.01 -0.67
Bra029471 (ORC1B)
 -1.88 -1.33 -0.3 -0.78 -1.08 -2.47 0.1 -0.34 -1.53 0.0 -0.55 -0.22 2.39 -2.86 -1.86 0.15 -0.03 1.21 -2.06 -1.02 -0.68 -0.16 1.98 -0.16 0.04 -0.49 -0.21 0.15 -1.39 -0.1 0.44
Bra029782 (MCM8)
 - -1.24 0.11 -0.21 -0.46 -2.38 -0.44 -0.58 -0.24 -1.51 0.01 -0.89 1.92 -2.9 -0.45 0.29 -1.34 1.17 -2.15 -0.28 -0.34 0.36 2.08 0.19 0.08 -0.12 -0.36 0.34 -0.37 -0.41 0.02
Bra032532 (ROW1)
 -1.35 -0.67 0.25 -0.29 -0.19 -1.18 -0.67 -1.37 -0.15 0.1 -0.05 0.06 2.05 -0.9 -0.57 0.33 0.18 0.84 -0.88 -0.68 -0.31 -0.1 1.38 -0.29 -0.05 0.02 -0.23 -0.22 -0.86 -0.59 -0.17
Bra033987 (POLA2)
 -1.4 -1.25 -0.45 -0.29 -1.48 -1.49 -0.48 -0.62 -1.34 0.1 0.23 -0.17 2.19 -1.32 -1.43 0.6 0.71 0.99 -1.64 -0.54 -0.2 -0.05 1.47 -0.24 -0.48 0.5 -0.07 -0.25 -1.32 -0.33 0.02
Bra034006 (EMB2813)
 -1.14 -1.24 0.09 -0.21 -1.11 -1.59 -0.28 -0.23 -1.96 0.22 -0.05 0.16 2.14 -1.49 -2.25 0.02 0.19 0.9 -1.54 -0.74 -0.46 0.19 1.52 0.16 -0.82 0.46 -0.31 0.13 -1.18 -0.35 0.43
Bra035055 (POLD3)
 -0.52 -0.72 -0.07 -0.52 -0.09 -0.12 0.01 -0.03 -0.77 -0.05 -0.28 -0.18 1.94 -1.48 -0.3 -0.13 0.12 0.86 -0.37 -0.75 -0.22 0.04 1.14 0.18 -0.54 0.14 -0.9 0.04 -1.17 -0.31 -0.12
Bra035159 (DRS1)
 -0.93 0.22 0.72 -0.16 -1.33 -2.77 -0.18 -0.52 -0.86 -0.07 0.15 0.0 1.86 -1.86 -1.66 0.18 -0.1 0.29 -1.59 -0.79 -0.56 -0.11 0.85 0.01 0.4 0.13 0.22 0.08 -1.34 0.24 1.0
Bra035755 (HTA13)
 -1.92 -1.57 -0.18 -0.99 -0.77 -2.28 -0.66 -0.61 -1.66 -0.67 -0.33 -1.08 2.44 -1.91 -2.14 -0.63 0.68 1.25 -2.27 -1.06 -0.7 -0.67 1.55 0.55 0.34 0.12 0.23 0.41 -0.45 -0.03 0.37
Bra036270 (SINE1)
 -2.03 -1.6 -2.12 -1.26 -0.73 -1.92 -0.42 -0.53 -0.91 -1.28 -0.83 -1.26 2.33 -0.73 -1.84 -0.04 -0.03 1.12 -2.08 -1.13 -0.76 -1.35 1.59 0.42 0.56 0.54 0.41 0.66 0.31 0.09 0.44
Bra037813 (H3.1)
 -1.38 -0.06 -0.07 -0.17 -0.13 -1.15 -0.93 -1.62 -0.5 -0.24 -0.31 -1.05 1.86 -0.55 -0.37 -0.13 -0.45 1.1 -0.93 -0.53 -0.18 0.32 1.7 0.1 -0.08 -0.09 -0.06 -0.11 -0.59 -0.06 -0.33
Bra038267 (HTB4)
 -1.97 -0.85 -0.64 -0.31 -0.39 -1.74 0.04 -0.51 -0.16 0.53 -0.3 0.44 2.18 -0.11 -0.5 0.41 -0.01 0.84 -0.66 -0.45 -0.08 0.41 0.94 -0.26 -0.42 -0.48 -0.41 -0.47 -0.97 -0.72 -0.52
Bra039939 (MET2)
 -0.79 -0.0 0.37 -0.07 -0.42 -1.19 -1.11 -1.29 -0.8 -0.18 -0.61 -0.51 1.9 -2.06 -1.1 0.06 -0.13 0.95 -1.55 -0.97 -0.72 -0.38 1.53 -0.05 0.0 0.3 0.03 0.58 -0.54 0.11 0.46

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.