Coexpression cluster: Cluster_2 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0051276 chromosome organization 8.33% (11/132) 6.28 0.0 0.0
GO:0008017 microtubule binding 9.85% (13/132) 5.18 0.0 0.0
GO:0015631 tubulin binding 9.85% (13/132) 5.07 0.0 0.0
GO:0003777 microtubule motor activity 9.09% (12/132) 5.4 0.0 0.0
GO:0007018 microtubule-based movement 9.09% (12/132) 5.4 0.0 0.0
GO:0007017 microtubule-based process 9.09% (12/132) 5.16 0.0 0.0
GO:0032508 DNA duplex unwinding 5.3% (7/132) 7.5 0.0 0.0
GO:0032392 DNA geometric change 5.3% (7/132) 7.5 0.0 0.0
GO:0008092 cytoskeletal protein binding 10.61% (14/132) 4.51 0.0 0.0
GO:0003774 cytoskeletal motor activity 9.09% (12/132) 5.0 0.0 0.0
GO:0071103 DNA conformation change 6.06% (8/132) 6.47 0.0 0.0
GO:0006996 organelle organization 8.33% (11/132) 5.05 0.0 0.0
GO:0005524 ATP binding 22.73% (30/132) 2.18 0.0 0.0
GO:0035639 purine ribonucleoside triphosphate binding 23.48% (31/132) 2.0 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 22.73% (30/132) 2.04 0.0 0.0
GO:0140657 ATP-dependent activity 11.36% (15/132) 3.32 0.0 0.0
GO:0030554 adenyl nucleotide binding 22.73% (30/132) 1.95 0.0 0.0
GO:0032555 purine ribonucleotide binding 23.48% (31/132) 1.88 0.0 0.0
GO:0032553 ribonucleotide binding 23.48% (31/132) 1.87 0.0 0.0
GO:0097367 carbohydrate derivative binding 23.48% (31/132) 1.86 0.0 0.0
GO:0017076 purine nucleotide binding 23.48% (31/132) 1.8 0.0 0.0
GO:1901265 nucleoside phosphate binding 23.48% (31/132) 1.73 0.0 0.0
GO:0000166 nucleotide binding 23.48% (31/132) 1.73 0.0 0.0
GO:0043168 anion binding 23.48% (31/132) 1.7 0.0 0.0
GO:0036094 small molecule binding 23.48% (31/132) 1.66 0.0 0.0
GO:0097159 organic cyclic compound binding 33.33% (44/132) 1.2 0.0 0.0
GO:1901363 heterocyclic compound binding 33.33% (44/132) 1.2 0.0 0.0
GO:0016043 cellular component organization 8.33% (11/132) 3.07 0.0 1e-06
GO:0071840 cellular component organization or biogenesis 8.33% (11/132) 2.94 0.0 2e-06
GO:0009055 electron transfer activity 4.55% (6/132) 4.11 1e-06 1.2e-05
GO:0043167 ion binding 25.76% (34/132) 1.22 2e-06 1.4e-05
GO:0051097 negative regulation of helicase activity 1.52% (2/132) 8.28 1e-05 6e-05
GO:1905775 negative regulation of DNA helicase activity 1.52% (2/132) 8.28 1e-05 6e-05
GO:1905774 regulation of DNA helicase activity 1.52% (2/132) 8.28 1e-05 6e-05
GO:1905463 negative regulation of DNA duplex unwinding 1.52% (2/132) 8.28 1e-05 6e-05
GO:1905462 regulation of DNA duplex unwinding 1.52% (2/132) 8.28 1e-05 6e-05
GO:0042555 MCM complex 1.52% (2/132) 8.28 1e-05 6e-05
GO:0051095 regulation of helicase activity 1.52% (2/132) 8.28 1e-05 6e-05
GO:0005488 binding 42.42% (56/132) 0.77 8e-06 6.2e-05
GO:0003677 DNA binding 12.88% (17/132) 1.79 9e-06 6.4e-05
GO:0009987 cellular process 29.55% (39/132) 1.01 1e-05 6.8e-05
GO:0032780 negative regulation of ATP-dependent activity 1.52% (2/132) 7.69 3.1e-05 0.000169
GO:0043462 regulation of ATP-dependent activity 1.52% (2/132) 7.69 3.1e-05 0.000169
GO:2001251 negative regulation of chromosome organization 1.52% (2/132) 7.69 3.1e-05 0.000169
GO:0006270 DNA replication initiation 1.52% (2/132) 7.28 6.2e-05 0.000329
GO:0005515 protein binding 18.94% (25/132) 1.17 9.7e-05 0.000504
GO:0043086 negative regulation of catalytic activity 1.52% (2/132) 6.95 0.000103 0.000524
GO:0003676 nucleic acid binding 15.91% (21/132) 1.29 0.000131 0.000654
GO:0044092 negative regulation of molecular function 1.52% (2/132) 6.69 0.000154 0.000723
GO:0051129 negative regulation of cellular component organization 1.52% (2/132) 6.69 0.000154 0.000723
GO:0010639 negative regulation of organelle organization 1.52% (2/132) 6.69 0.000154 0.000723
GO:0033044 regulation of chromosome organization 1.52% (2/132) 6.47 0.000215 0.000991
GO:0033043 regulation of organelle organization 1.52% (2/132) 5.82 0.000558 0.002525
GO:0005694 chromosome 1.52% (2/132) 5.58 0.000788 0.0035
GO:0051128 regulation of cellular component organization 1.52% (2/132) 5.19 0.001362 0.005942
GO:0006259 DNA metabolic process 3.03% (4/132) 3.04 0.001495 0.006407
GO:0008094 ATP-dependent activity, acting on DNA 2.27% (3/132) 3.59 0.002018 0.008498
GO:0048478 obsolete replication fork protection 0.76% (1/132) 8.28 0.003227 0.013353
GO:0003674 molecular_function 52.27% (69/132) 0.35 0.005708 0.023218
GO:0030261 chromosome condensation 0.76% (1/132) 7.28 0.006444 0.023792
GO:0000796 condensin complex 0.76% (1/132) 7.28 0.006444 0.023792
GO:0007076 mitotic chromosome condensation 0.76% (1/132) 7.28 0.006444 0.023792
GO:0006275 regulation of DNA replication 0.76% (1/132) 7.28 0.006444 0.023792
GO:0065009 regulation of molecular function 1.52% (2/132) 4.03 0.006733 0.024485
GO:0140097 catalytic activity, acting on DNA 2.27% (3/132) 3.02 0.006234 0.024934
GO:0050790 regulation of catalytic activity 1.52% (2/132) 4.07 0.006393 0.025151
GO:0048523 negative regulation of cellular process 1.52% (2/132) 3.88 0.008178 0.028863
GO:0048519 negative regulation of biological process 1.52% (2/132) 3.88 0.008178 0.028863
GO:0009263 deoxyribonucleotide biosynthetic process 0.76% (1/132) 6.69 0.00965 0.033565
GO:1903047 mitotic cell cycle process 0.76% (1/132) 6.28 0.012846 0.043423
GO:0140658 ATP-dependent chromatin remodeler activity 1.52% (2/132) 3.55 0.01279 0.043851
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_4 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_27 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_49 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_129 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_150 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_189 0.045 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_191 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_201 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_231 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.016 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_155 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.022 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_77 0.017 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (132) (download table)

InterPro Domains

GO Terms

Family Terms