Coexpression cluster: Cluster_42 (Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005488 binding 39.1% (61/156) 1.04 0.0 1e-06
GO:0003674 molecular_function 50.64% (79/156) 0.78 0.0 4e-06
GO:0032559 adenyl ribonucleotide binding 13.46% (21/156) 1.9 0.0 2.3e-05
GO:0005524 ATP binding 12.82% (20/156) 1.92 0.0 2.8e-05
GO:0005515 protein binding 15.38% (24/156) 1.64 1e-06 3.5e-05
GO:0030554 adenyl nucleotide binding 13.46% (21/156) 1.8 1e-06 4.1e-05
GO:0017076 purine nucleotide binding 14.1% (22/156) 1.7 1e-06 4.9e-05
GO:0032555 purine ribonucleotide binding 13.46% (21/156) 1.72 2e-06 6e-05
GO:0035639 purine ribonucleoside triphosphate binding 12.82% (20/156) 1.73 3e-06 6.1e-05
GO:0097367 carbohydrate derivative binding 13.46% (21/156) 1.7 2e-06 6.2e-05
GO:0032553 ribonucleotide binding 13.46% (21/156) 1.71 2e-06 6.2e-05
GO:1901265 nucleoside phosphate binding 14.1% (22/156) 1.63 3e-06 6.3e-05
GO:0000166 nucleotide binding 14.1% (22/156) 1.63 3e-06 6.3e-05
GO:0036094 small molecule binding 14.1% (22/156) 1.58 5e-06 9.7e-05
GO:0043168 anion binding 13.46% (21/156) 1.57 8e-06 0.00016
GO:0140658 ATP-dependent chromatin remodeler activity 2.56% (4/156) 4.76 1.4e-05 0.000267
GO:0050794 regulation of cellular process 7.69% (12/156) 2.07 3.4e-05 0.000602
GO:0065007 biological regulation 7.69% (12/156) 2.03 4.5e-05 0.000607
GO:2001141 regulation of RNA biosynthetic process 6.41% (10/156) 2.29 4.3e-05 0.000618
GO:0006355 regulation of DNA-templated transcription 6.41% (10/156) 2.29 4.3e-05 0.000618
GO:0050789 regulation of biological process 7.69% (12/156) 2.05 3.8e-05 0.000631
GO:0051252 regulation of RNA metabolic process 6.41% (10/156) 2.27 4.9e-05 0.000641
GO:0043167 ion binding 18.59% (29/156) 1.14 4.1e-05 0.000642
GO:0019219 regulation of nucleobase-containing compound metabolic process 6.41% (10/156) 2.23 6.1e-05 0.000729
GO:0007030 Golgi organization 1.28% (2/156) 7.22 5.9e-05 0.000743
GO:0009889 regulation of biosynthetic process 6.41% (10/156) 2.15 9.7e-05 0.000941
GO:0010468 regulation of gene expression 6.41% (10/156) 2.15 9.7e-05 0.000941
GO:0010556 regulation of macromolecule biosynthetic process 6.41% (10/156) 2.15 9.7e-05 0.000941
GO:0031326 regulation of cellular biosynthetic process 6.41% (10/156) 2.15 9.7e-05 0.000941
GO:0051171 regulation of nitrogen compound metabolic process 6.41% (10/156) 2.15 9.4e-05 0.001046
GO:0080090 regulation of primary metabolic process 6.41% (10/156) 2.15 9.4e-05 0.001046
GO:0019222 regulation of metabolic process 6.41% (10/156) 2.08 0.000142 0.001253
GO:0031323 regulation of cellular metabolic process 6.41% (10/156) 2.08 0.00014 0.001271
GO:0060255 regulation of macromolecule metabolic process 6.41% (10/156) 2.08 0.00014 0.001271
GO:0031625 ubiquitin protein ligase binding 1.28% (2/156) 6.22 0.000295 0.002456
GO:0044389 ubiquitin-like protein ligase binding 1.28% (2/156) 6.22 0.000295 0.002456
GO:0140096 catalytic activity, acting on a protein 10.9% (17/156) 1.38 0.000316 0.002559
GO:0008150 biological_process 26.28% (41/156) 0.76 0.000348 0.002745
GO:0140513 nuclear protein-containing complex 2.56% (4/156) 3.58 0.000366 0.002813
GO:0008094 ATP-dependent activity, acting on DNA 2.56% (4/156) 3.54 0.000404 0.003033
GO:0044877 protein-containing complex binding 1.92% (3/156) 4.22 0.000562 0.004115
GO:0140657 ATP-dependent activity 4.49% (7/156) 2.28 0.000646 0.004611
GO:0019538 protein metabolic process 11.54% (18/156) 1.23 0.000677 0.004726
GO:1901363 heterocyclic compound binding 21.15% (33/156) 0.8 0.00097 0.006468
GO:0097159 organic cyclic compound binding 21.15% (33/156) 0.8 0.00097 0.006468
GO:0006357 regulation of transcription by RNA polymerase II 1.28% (2/156) 5.35 0.001065 0.006945
GO:0140097 catalytic activity, acting on DNA 2.56% (4/156) 3.06 0.00139 0.008875
GO:0016592 mediator complex 1.28% (2/156) 5.1 0.001501 0.009008
GO:0046907 intracellular transport 2.56% (4/156) 3.04 0.001489 0.009114
GO:0051649 establishment of localization in cell 2.56% (4/156) 3.04 0.001489 0.009114
GO:0016887 ATP hydrolysis activity 2.56% (4/156) 2.89 0.002181 0.01283
GO:0006468 protein phosphorylation 6.41% (10/156) 1.55 0.002402 0.01386
GO:0016310 phosphorylation 6.41% (10/156) 1.54 0.002494 0.014118
GO:0004672 protein kinase activity 6.41% (10/156) 1.52 0.002761 0.015338
GO:0003677 DNA binding 6.41% (10/156) 1.52 0.002837 0.015476
GO:0003712 transcription coregulator activity 1.28% (2/156) 4.63 0.002902 0.015546
GO:0036211 protein modification process 7.05% (11/156) 1.4 0.003265 0.017185
GO:0006886 intracellular protein transport 1.92% (3/156) 3.32 0.003411 0.017342
GO:1901564 organonitrogen compound metabolic process 11.54% (18/156) 1.02 0.003363 0.017392
GO:0005634 nucleus 2.56% (4/156) 2.6 0.004491 0.018206
GO:0048280 vesicle fusion with Golgi apparatus 0.64% (1/156) 7.8 0.004473 0.018383
GO:0006906 vesicle fusion 0.64% (1/156) 7.8 0.004473 0.018383
GO:0090174 organelle membrane fusion 0.64% (1/156) 7.8 0.004473 0.018383
GO:0061025 membrane fusion 0.64% (1/156) 7.8 0.004473 0.018383
GO:0004198 calcium-dependent cysteine-type endopeptidase activity 0.64% (1/156) 7.8 0.004473 0.018383
GO:0048284 organelle fusion 0.64% (1/156) 7.8 0.004473 0.018383
GO:0031491 nucleosome binding 0.64% (1/156) 7.8 0.004473 0.018383
GO:0016050 vesicle organization 0.64% (1/156) 7.8 0.004473 0.018383
GO:0043412 macromolecule modification 7.05% (11/156) 1.33 0.004745 0.018486
GO:0003682 chromatin binding 1.28% (2/156) 4.28 0.004729 0.018667
GO:0019899 enzyme binding 1.28% (2/156) 4.28 0.004729 0.018667
GO:0016773 phosphotransferase activity, alcohol group as acceptor 6.41% (10/156) 1.45 0.003963 0.019173
GO:0051641 cellular localization 2.56% (4/156) 2.65 0.003878 0.01939
GO:0004674 protein serine/threonine kinase activity 1.28% (2/156) 4.41 0.003948 0.019418
GO:0017111 ribonucleoside triphosphate phosphatase activity 3.21% (5/156) 2.25 0.004218 0.01977
GO:0016772 transferase activity, transferring phosphorus-containing groups 7.05% (11/156) 1.35 0.004202 0.020009
GO:0016301 kinase activity 6.41% (10/156) 1.43 0.004347 0.020062
GO:0016192 vesicle-mediated transport 1.92% (3/156) 3.1 0.005226 0.0201
GO:0016462 pyrophosphatase activity 3.21% (5/156) 2.17 0.005374 0.020406
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.21% (5/156) 2.13 0.006028 0.022328
GO:0016817 hydrolase activity, acting on acid anhydrides 3.21% (5/156) 2.12 0.006126 0.022413
GO:0032991 protein-containing complex 3.85% (6/156) 1.89 0.006012 0.022546
GO:0004175 endopeptidase activity 1.92% (3/156) 2.93 0.007298 0.026377
GO:0043231 intracellular membrane-bounded organelle 2.56% (4/156) 2.35 0.008055 0.027776
GO:0043227 membrane-bounded organelle 2.56% (4/156) 2.35 0.008055 0.027776
GO:0004402 histone acetyltransferase activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0140993 histone modifying activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0061733 peptide-lysine-N-acetyltransferase activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0097346 INO80-type complex 0.64% (1/156) 6.8 0.008926 0.027895
GO:0031011 Ino80 complex 0.64% (1/156) 6.8 0.008926 0.027895
GO:0004197 cysteine-type endopeptidase activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0034212 peptide N-acetyltransferase activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity 0.64% (1/156) 6.8 0.008926 0.027895
GO:0070603 SWI/SNF superfamily-type complex 0.64% (1/156) 6.8 0.008926 0.027895
GO:0006796 phosphate-containing compound metabolic process 6.41% (10/156) 1.3 0.007989 0.028195
GO:0006793 phosphorus metabolic process 6.41% (10/156) 1.3 0.007989 0.028195
GO:0004222 metalloendopeptidase activity 1.28% (2/156) 3.72 0.010154 0.031405
GO:0015031 protein transport 1.92% (3/156) 2.75 0.010344 0.031665
GO:0070727 cellular macromolecule localization 1.92% (3/156) 2.7 0.011204 0.032633
GO:0033036 macromolecule localization 1.92% (3/156) 2.7 0.011204 0.032633
GO:0008104 protein localization 1.92% (3/156) 2.7 0.011204 0.032633
GO:0045184 establishment of protein localization 1.92% (3/156) 2.7 0.011204 0.032633
GO:0006508 proteolysis 4.49% (7/156) 1.54 0.011102 0.033643
GO:0043632 modification-dependent macromolecule catabolic process 1.28% (2/156) 3.6 0.01195 0.033821
GO:0019941 modification-dependent protein catabolic process 1.28% (2/156) 3.6 0.01195 0.033821
GO:0006511 ubiquitin-dependent protein catabolic process 1.28% (2/156) 3.6 0.01195 0.033821
GO:0043170 macromolecule metabolic process 12.18% (19/156) 0.81 0.012316 0.03453
GO:0006366 transcription by RNA polymerase II 0.64% (1/156) 6.22 0.01336 0.034551
GO:0008080 N-acetyltransferase activity 0.64% (1/156) 6.22 0.01336 0.034551
GO:0018394 peptidyl-lysine acetylation 0.64% (1/156) 6.22 0.01336 0.034551
GO:0016407 acetyltransferase activity 0.64% (1/156) 6.22 0.01336 0.034551
GO:0016573 histone acetylation 0.64% (1/156) 6.22 0.01336 0.034551
GO:0006475 internal protein amino acid acetylation 0.64% (1/156) 6.22 0.01336 0.034551
GO:0018393 internal peptidyl-lysine acetylation 0.64% (1/156) 6.22 0.01336 0.034551
GO:0005543 phospholipid binding 1.28% (2/156) 3.52 0.013218 0.036381
GO:0005575 cellular_component 10.26% (16/156) 0.89 0.013188 0.036634
GO:0051603 proteolysis involved in protein catabolic process 1.28% (2/156) 3.35 0.016632 0.042646
GO:0031683 G-protein beta/gamma-subunit complex binding 0.64% (1/156) 5.8 0.017774 0.04335
GO:1904949 ATPase complex 0.64% (1/156) 5.8 0.017774 0.04335
GO:0016410 N-acyltransferase activity 0.64% (1/156) 5.8 0.017774 0.04335
GO:0006473 protein acetylation 0.64% (1/156) 5.8 0.017774 0.04335
GO:0043543 protein acylation 0.64% (1/156) 5.8 0.017774 0.04335
GO:0030126 COPI vesicle coat 0.64% (1/156) 5.8 0.017774 0.04335
GO:0016740 transferase activity 8.97% (14/156) 0.89 0.020077 0.048186
GO:0071705 nitrogen compound transport 1.92% (3/156) 2.39 0.019955 0.048278
GO:0009056 catabolic process 1.92% (3/156) 2.37 0.020779 0.049473
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_90 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_117 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_119 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_200 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_240 0.014 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_340 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_347 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_7 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_18 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_22 0.018 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_116 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_138 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_199 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_5 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_9 0.013 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_10 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_17 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_20 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_24 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_39 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_43 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_47 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_49 0.012 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_55 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_65 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_66 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_69 0.011 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_72 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_74 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_81 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_94 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_96 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_106 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_111 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_134 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_176 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_440 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_464 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_623 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (156) (download table)

InterPro Domains

GO Terms

Family Terms