Spov3_chr3.01779 (ZIP3, VPS35A)

Aliases : ZIP3, VPS35A

Description : component *(VPS35) of Retromer protein recycling complex

Gene families : OG0000113 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr3.01779
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_151

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030906	retromer, cargo-selective complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005839	proteasome core complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016830	carbon-carbon lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016832	aldehyde-lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0050661	NADP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071586	CAAX-box protein processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005378	Vps35	12	747

External Links

No external refs found!

Spov3_chr3.01779 (ZIP3, VPS35A)

Expression Profile

Co-expression Networks

Functional Annotation