Spov3_chr2.01420 (emb2171, RPL23)

Aliases : emb2171, RPL23

Description : component *(uL14) of large ribosomal-subunit (LSU) proteome

Gene families : OG0001583 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001583_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr2.01420
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_116

Target	Alias	Description	ECC score	Gene Family Method
Bra015319	No alias	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra040138	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_183820.1	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp6g14310.1	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_uL14	22	140

External Links

No external refs found!

Spov3_chr2.01420 (emb2171, RPL23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation