Spov3_chr1.02437

Description : mitochondrial RNA pseudouridine synthase *(PUS3/4)

Gene families : OG0070284 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.02437
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_31

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004664	prephenate dehydratase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009094	L-phenylalanine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009095	aromatic amino acid family biosynthetic process, prephenate pathway	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030599	pectinesterase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0045229	external encapsulating structure organization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071554	cell wall organization or biogenesis	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1902223	erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	195	364

External Links

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Spov3_chr1.02437

Expression Profile

Co-expression Networks

Functional Annotation