Spov3_chr1.01677 (TRM2b)

Aliases : TRM2b

Description : EC_2.1 transferase transferring one-carbon group. tRNA uridine-methyltransferase *(TRM2)

Gene families : OG0009366 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Spinacia oleracea (Sol) PCC: Spov3_chr1.01677
Cluster	Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm): Cluster_122

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_6_46081.1	TRM2b	EC_2.1 transferase transferring one-carbon group. tRNA...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0006551	leucine metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009098	leucine biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Spinacia oleracea GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Spinacia oleracea GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Spinacia oleracea GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR010280	U5_MeTrfase_fam	731	779
IPR025714	Methyltranfer_dom	591	660

External Links

No external refs found!

Spov3_chr1.01677 (TRM2b)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation