Bra008580 (ATCRM1, ATXPO1, XPO1,...)

Aliases : ATCRM1, ATXPO1, XPO1, HIT2, XPO1A

Description : export karyopherin *(XPO1) of RNA-induced silencing complex (RISC) export. nucleocytoplasmic export karyopherin *(XPO1)

Gene families : OG0001996 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001996_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra008580
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_134

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005049	nuclear export signal receptor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0140104	molecular carrier activity	None	Extended
MF	GO:0140142	nucleocytoplasmic carrier activity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004540	RNA nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004619	phosphoglycerate mutase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006006	glucose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006007	glucose catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019320	hexose catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046365	monosaccharide catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR040485	XPO1_repeat_3	539	588
IPR041123	CRM1_repeat	386	421
IPR001494	Importin-beta_N	86	152
IPR013598	Exportin-1/Importin-b-like	164	307
IPR014877	XPO1_C_dom	762	1083
IPR041235	Exp1_repeat_2	458	525

External Links

No external refs found!

Bra008580 (ATCRM1, ATXPO1, XPO1,...)

Expression Profile

Co-expression Networks

Functional Annotation