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  5. Lsat_1_v5_gn_9_8981.1

Lsat_1_v5_gn_9_8981.1 (PARP1)


Aliases : PARP1

Description : protein ADP-ribosyltransferase *(PARP). EC_2.4 glycosyltransferase


Gene families : OG0005326 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_9_8981.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_185


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003916 DNA topoisomerase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004175 endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004222 metalloendopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005092 GDP-dissociation inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006265 DNA topological change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006996 organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007265 Ras protein signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0007266 Rho protein signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008092 cytoskeletal protein binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008289 lipid binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015079 potassium ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0016459 myosin complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0018024 obsolete histone lysine N-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019867 outer membrane IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030118 clathrin coat IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030125 clathrin vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030132 clathrin coat of coated pit IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031047 regulatory ncRNA-mediated gene silencing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032259 methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071805 potassium ion transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0080009 mRNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1903311 regulation of mRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004102 Poly(ADP-ribose)pol_reg_dom 640 769
IPR008893 WGR_domain 528 607
IPR001510 Znf_PARP 116 187
IPR001510 Znf_PARP 11 87
IPR012982 PARP1-like_PADR1_Zn_ribbon 296 345
IPR001357 BRCT_dom 402 475
IPR012317 Poly(ADP-ribose)pol_cat_dom 783 984
No external refs found!