1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Bra007486

Bra007486 (SK9, ASK9)


Aliases : SK9, ASK9

Description : ASK-type linker component of SCF E3 ubiquitin ligase complexes


Gene families : OG0005005 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005005_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra007486
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Bra007500 SK12, ASK12 ASK-type linker component of SCF E3 ubiquitin ligase complexes 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003700 DNA-binding transcription factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004176 ATP-dependent peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004650 polygalacturonase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006355 regulation of DNA-templated transcription IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008200 ion channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009889 regulation of biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010468 regulation of gene expression IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016247 channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016248 channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017080 sodium channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019222 regulation of metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019871 sodium channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019915 lipid storage IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031326 regulation of cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042545 cell wall modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045229 external encapsulating structure organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051235 maintenance of location IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0052689 carboxylic ester hydrolase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0060255 regulation of macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071555 cell wall organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0080090 regulation of primary metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0099106 ion channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140110 transcription regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 5 62
IPR016072 Skp1_comp_dimer 108 156
No external refs found!