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Heatmap: Cluster_42 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
Light: 268 uE m-2 s-1
Light: 202.5 uE m-2 s-1 (Control)
Light: 135 uE m-2 s-1
Light: 67.5 uE m-2 s-1
Photoperiod: L24
Photoperiod: L20D4 (Control)
Photoperiod: L12D12
Photoperiod: L8D16
RBW: 4:1:1 (Control)
RBW: 4:1:0
RBW: 3:1:1
RBW: 3:1:0
Nitrogen: 0%
Nitrogen: 25%
Nitrogen: 50%
Nitrogen: 100% (Control)
Nitrogen: 150%
Phosphorous: 0%
Phosphorous: 25%
Phosphorous: 50%
Phosphorous: 100% (Control)
Phosphorous: 150%
Potassium: 0%
Potassium: 25%
Potassium: 50%
Potassium: 100% (Control)
Potassium: 150%
Temperature: 20°C
Temperature: 25°C (Control)
Temperature: 30°C
Temperature: 35°C
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
Bra001609 (FADB)
 - - - - - 3.34 2.07 3.45 - - - - - - - - - - - - - - - - - - - - 2.53 - -
Bra003780 (ORA47)
 0.26 0.34 0.23 -1.52 -0.09 -1.57 -3.39 -2.53 -0.08 -2.05 -1.13 -0.46 -1.41 -0.3 -0.03 -1.58 -2.35 -1.48 -2.28 -1.58 -3.0 -1.59 1.32 -0.84 -0.57 -0.01 0.0 -0.86 2.76 1.77 1.35
-2.95 0.63 0.21 -0.59 -2.02 -3.15 -0.8 -0.53 -0.77 -0.83 0.05 -0.02 1.78 -2.16 -3.79 -0.73 0.07 -0.17 -2.01 -0.74 -2.98 -0.91 2.09 0.18 -0.06 -0.04 -0.16 0.28 0.53 1.38 0.54
Bra005129 (APD1)
 - - - - - - - - - - - - 4.0 - - - - - - - - - 3.9 - - - - - - - -
- - 1.67 - 1.78 -0.27 1.15 1.63 - -0.28 - -0.2 2.53 - - - - -0.28 - - -0.17 - 2.85 - - - - - - 0.89 -
Bra006041 (PROPEP4)
 - - - - 2.9 - - - - - - - 2.96 - - - - - - - - - 3.05 - - - - - 2.91 - -
Bra006356 (SEIPIN1)
 - - - 1.64 - - - - - - - - - - - - - - - - - - 1.3 2.23 2.27 - - - 3.04 2.28 1.48
- - - - 3.32 - - - - - - - - - - - - - - - - - 3.3 - - - - - 3.49 - -
- 2.22 - - - - 1.65 1.79 - - - - - - - - - - 1.71 - - - - - - - - - 4.04 - -
Bra007486 (SK9)
 - - - - - - - - - - - - - - - - - 2.89 2.88 - - - - - - - - - 3.11 2.92 -
Bra007586 (PLIM2c)
 - - - 2.25 2.03 - - 0.4 - - - - 2.19 - 0.9 - - - - - 0.47 1.45 2.48 - - - - - 2.23 - -
- - - - 2.4 - - - - - - - - - - - - - - - - - 1.44 - 2.48 - - 1.5 3.55 - 1.52
- - -2.53 - - - - -0.17 0.57 -1.06 -0.22 -0.37 - 0.64 - -0.28 - -0.08 - -0.37 -0.44 1.46 1.47 1.51 0.59 0.47 -2.04 0.48 2.23 0.84 1.08
Bra009737 (SQP2)
 -2.6 -1.21 -3.02 -2.69 0.5 -2.97 -0.8 0.47 0.29 1.32 -0.94 -0.29 1.83 -1.14 -1.32 -0.88 -0.96 1.01 -4.18 -0.58 -1.94 -0.28 1.75 -2.44 0.33 -1.23 -1.17 -0.84 -1.75 0.59 2.09
Bra010488 (REN1)
 0.75 0.75 0.59 -1.17 0.18 1.84 -0.35 0.71 - -0.09 -0.23 -1.19 -0.71 -1.88 -1.22 -2.94 0.24 -1.69 -0.08 0.31 0.14 -3.27 0.74 -0.17 -0.47 -0.34 - -0.89 1.82 0.12 -0.38
2.92 - - - - 2.01 0.93 0.87 - - - - - - - - - 1.24 - - - - - - 1.04 - 0.99 - 2.8 1.18 -
Bra010947 (RIC2)
 -1.86 -0.86 -0.86 -0.64 0.04 -0.33 -0.49 -3.85 -1.06 -0.47 -0.32 0.2 0.66 1.03 1.63 -0.34 -3.51 - 0.35 -0.82 -0.89 0.72 -2.46 0.72 1.14 -0.58 0.13 0.53 0.91 0.28 0.34
-1.5 -1.61 0.44 -0.52 -0.8 -1.29 -0.83 -1.17 -1.44 -0.98 -0.84 -0.79 -0.51 -0.52 -0.65 -0.09 -0.49 -0.09 -0.47 0.15 -0.56 -0.89 1.73 -1.39 -1.35 0.8 -1.27 -0.73 2.31 2.01 -0.44
Bra011529 (RRTF1)
 - -2.94 0.51 -0.13 -2.38 - - - - -3.41 -3.52 -0.96 - - - -1.12 -1.69 - -0.93 -0.67 -1.7 - 1.2 -3.48 - 1.14 - - 4.05 2.03 -3.16
Bra011732 (PLP4)
 - - - - - - - - - - - - - - - 1.68 - - - 2.58 1.54 - 3.16 - - - - - 2.75 - 1.7
Bra013128 (NAI1)
 - - - - - - 1.36 - - - - - 2.96 - 1.65 0.72 - 2.45 - - - - 1.48 - - - - - - - 2.92
Bra015492 (ACX6)
 - - - - -1.03 -2.05 - - - -2.06 - - 2.73 -1.89 - - - -1.07 - - - - 2.92 0.78 2.2 2.45 0.67 -0.17 - -0.88 -1.83
Bra015882 (ORA47)
 -1.35 - -0.08 - 0.98 -1.33 -3.9 -2.2 -0.07 - -2.7 -1.24 - -1.77 -1.74 -1.39 -2.56 -0.18 -2.85 -0.75 -2.58 0.64 2.75 -0.91 - - -2.47 -1.11 3.58 -0.35 -1.48
- - - - - - - - 1.88 - - - 0.62 - - 2.67 - 1.36 - - - - - - 2.04 0.81 0.6 - 2.69 1.57 -
Bra016638 (OCT3)
 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
Bra017656 (RRTF1)
 - - 1.39 0.17 - - - - - - - - - - - - - - 0.25 - - - 2.28 - - -0.89 - - 3.74 2.87 -
Bra019162 (CBF1)
 - -2.6 -0.21 0.37 0.77 -3.07 -3.11 -0.21 -3.15 - -2.98 -2.12 -2.77 - -0.96 0.03 -1.91 0.09 -2.87 -1.35 -3.1 - 1.79 -1.43 -0.71 -0.33 -2.03 1.01 2.93 2.63 -1.25
Bra019404 (TH1)
 - - 0.4 -2.19 -2.18 -1.01 - -1.61 -0.79 -0.58 -1.62 -1.52 2.16 - -0.15 - -1.53 0.57 -0.58 - -2.21 - -0.28 1.15 0.61 2.49 0.31 0.97 -0.07 1.42 0.49
Bra020802 (LHT7)
 3.5 - - - - 3.18 - - - - - - - - - - - - - - - - - - - - - - 3.41 - -
Bra021479 (MUB1)
 - - - - 3.22 2.1 - - - - 3.12 - - - - - - - - - - - 3.12 - - - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - 3.81 - - - - 4.09 - -
Bra022319 (NAC058)
 - - - - - - - - - - - - 3.22 - - - - - - - - - 4.44 - - - - - - - -
Bra023044 (PUB23)
 -2.01 -1.71 0.58 0.26 -0.24 0.78 -0.75 0.38 -2.6 -0.03 0.01 -1.0 -0.11 -0.47 0.1 0.62 -0.38 -1.11 0.51 -0.28 0.07 0.67 0.97 -1.69 -0.44 -0.13 -0.74 -1.41 1.44 1.07 -0.79
Bra023149 (PER7)
 - -0.54 - - -0.79 1.35 1.22 -0.7 0.92 - - - - - - - -0.9 - - - 0.02 -1.02 0.62 -0.95 - - 1.83 - 2.86 2.49 0.85
- - - - - - - 2.2 - - - 2.22 - - - 2.46 - - 2.36 - - - - - - - - - 3.47 - -
Bra024890 (At17.1)
 0.19 0.68 0.8 0.69 0.26 -0.56 -1.1 0.26 -0.68 -0.28 -1.14 -0.95 -0.53 -0.09 -0.7 -0.38 0.08 -0.48 -0.23 0.16 -0.33 -0.95 1.86 -1.03 -2.11 0.33 -0.25 -0.31 0.77 0.09 -0.24
Bra025829 (RANGAP2)
 0.04 - - - - 0.9 -1.54 -0.52 - - - 0.21 -1.18 2.52 - - - - - - -1.35 -1.39 0.98 2.53 -1.35 -1.08 -0.31 0.87 2.43 0.92 -1.1
Bra028201 (ALC)
 - - - - - - - - - - - - - - - - - - - - - - 2.63 2.54 - - - - 4.25 - -
Bra029045 (UGT79B6)
 - - - - - - - - - - - - 3.54 - 1.99 1.97 - - - - - - - - - - 1.76 - 2.04 - 1.99
- - - - - - - - - - - - - - - - - - - - - - 3.85 - - - - - 4.05 - -
- - - - - - - - - - - - 2.64 - 2.65 - - - - - - - - 2.31 1.82 - - - 2.6 - 1.97
Bra032154 (sks16)
 - - - - - - - - - 0.84 - - 0.95 - - - 0.86 1.05 - - - - - 2.82 - - - - 3.4 1.91 1.02
- - - - - - 3.78 - - - - - - - - - - - - - - - - - - - - - 4.11 - -
Bra032468 (PICL)
 - - - - - - - - 0.44 - - - 3.35 - - - 0.82 0.54 - - - - 3.47 - - - - - - 1.71 0.9
Bra032610 (RSF1)
 -0.36 -0.55 0.32 -0.68 -0.92 -0.99 -3.69 0.12 -0.14 0.47 -0.59 -0.4 0.12 -3.21 - 0.69 -0.63 0.73 -0.6 -0.0 -0.69 -0.56 1.51 -1.04 -0.21 0.66 -0.16 -1.74 0.61 0.52 1.9
- - - - 1.94 - 0.12 - - - - - 1.37 - - - 1.85 - - - 0.25 - 4.22 - - - - - - - -
Bra033307 (RSL4)
 - - - - - - - - - - - - - 3.87 - - - - - - - - - - - - - - 4.03 - -
Bra033791 (ADR2)
 - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
Bra034624 (RRTF1)
 - - 1.59 0.58 -1.72 -1.75 - - - -2.81 - - - - - - - -0.75 - -0.63 - -3.84 0.12 - - -0.36 - -1.44 3.72 3.17 -3.59
- - - - 3.04 - - - - - - - - - - - - - - - - - 4.51 - - - - - - - -
Bra034743 (AGC1.5)
 - - - - 3.49 - - - - - - - - - - - - - - - - - 4.31 - - - - - - - -
- -0.43 - 0.93 2.04 0.3 0.22 - - 0.26 - - 2.7 -0.17 -0.03 0.54 0.65 - - - - - 0.62 - - - - - 2.67 0.42 -
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
Bra036868 (CIPK4)
 - - - - 4.04 - - - - - - - - - - - - - - - - - 3.86 - - - - - - - -
Bra037759 (AGL57)
 - - - - -1.48 - - - - - - - 2.66 - - - -1.45 0.61 -1.79 - - - 2.76 -0.55 - - - 1.66 0.92 1.47 2.78
- - - - - 3.2 - - - - - - - - - - - - - - - - - - - - - - 4.45 - -
Bra038741 (FLA14)
 - - - - - - - - 0.97 - - - - 2.06 0.44 - - - - - - - 1.15 1.67 1.18 - 1.12 - 3.32 0.23 1.33
-0.77 0.5 0.85 0.25 0.33 -0.32 -1.28 -0.76 -1.03 -1.13 -1.68 -0.34 0.83 1.43 0.17 -1.5 -0.73 -0.2 -1.94 -0.74 -0.82 -0.38 0.96 0.06 -0.9 0.03 -0.08 0.84 0.9 0.18 -0.0
- - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.95 - -
Bra041162 (SUP32)
 - - - - 2.95 - - - - - - - - 1.21 - - - - - - -2.29 - - - - - - - 4.37 - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.