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  5. Lsat_1_v5_gn_8_166680.1

Lsat_1_v5_gn_8_166680.1


Description : not classified


Gene families : OG0005528 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_8_166680.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_132


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000178 exosome (RNase complex) IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003883 CTP synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0032977 membrane insertase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034227 tRNA thio-modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140104 molecular carrier activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140597 protein carrier chaperone IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1905354 exoribonuclease complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 460 567
IPR011545 DEAD/DEAH_box_helicase_dom 251 422
No external refs found!