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Aliases : PMR6
Description : pectate lyase. EC_4.2 carbon-oxygen lyase
Gene families : OG0001541 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001541_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra007116 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_238 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003824 | catalytic activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004672 | protein kinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005524 | ATP binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006468 | protein phosphorylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006479 | protein methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006629 | lipid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006631 | fatty acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006633 | fatty acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008150 | biological_process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008152 | metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008213 | protein alkylation | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016301 | kinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016310 | phosphorylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016570 | histone modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016571 | histone methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016579 | protein deubiquitination | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016740 | transferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0018024 | obsolete histone lysine N-methyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019538 | protein metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0032259 | methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034968 | histone lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0036211 | protein modification process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043412 | macromolecule modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043414 | macromolecule methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043687 | post-translational protein modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0071704 | organic substance metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0101005 | deubiquitinase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 152 | 334 |
| No external refs found! |