Aliases : VALRS, TWN2
Description : valine-tRNA ligase. EC_6.1 ligase forming carbon-oxygen bond
Gene families : OG0000781 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000781_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_7_60741.1 | |
Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150 |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEA | Interproscan |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | Interproscan |
MF | GO:0004832 | valine-tRNA ligase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
CC | GO:0005737 | cytoplasm | IEA | Interproscan |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | Interproscan |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0002097 | tRNA wobble base modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003724 | RNA helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0003972 | RNA ligase (ATP) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0004386 | helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0005634 | nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0005643 | nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0005730 | nucleolus | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006177 | GMP biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006351 | DNA-templated transcription | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006396 | RNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006401 | RNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006402 | mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006414 | translational elongation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0008033 | tRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008168 | methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008170 | N-methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008270 | zinc ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0008452 | RNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0010629 | negative regulation of gene expression | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0016071 | mRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016462 | pyrophosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0016592 | mediator complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0030515 | snoRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0032774 | RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0033588 | elongator holoenzyme complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0034470 | ncRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0034511 | U3 snoRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0042393 | histone binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0043226 | organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0043227 | membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0043229 | intracellular organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:0046037 | GMP metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0097747 | RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
MF | GO:0140657 | ATP-dependent activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
No external refs found! |