Lsat_1_v5_gn_6_58860.1 (AtSEC23B)

Aliases : AtSEC23B

Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex

Gene families : OG0000425 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000425_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_6_58860.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_18

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030127	COPII vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0000166	nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000502	proteasome complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003924	GTPase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005516	calmodulin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005839	proteasome core complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007264	small GTPase mediated signal transduction	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019902	phosphatase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019903	protein phosphatase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070569	uridylyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR012990	Sec23_24_beta_S	415	517
IPR007123	Gelsolin-like_dom	644	732
IPR006900	Sec23/24_helical_dom	532	627
IPR006895	Znf_Sec23_Sec24	57	95
IPR006896	Sec23/24_trunk_dom	128	403

External Links

No external refs found!

Lsat_1_v5_gn_6_58860.1 (AtSEC23B)

Expression Profile

Co-expression Networks

Functional Annotation