Lsat_1_v5_gn_5_190601.1 (AtPMS1, PMS1)

Aliases : AtPMS1, PMS1

Description : component *(PMS1) of MLH1-PMS1 heterodimer

Gene families : OG0001298 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001298_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_190601.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003678	DNA helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003689	DNA clamp loader activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003909	DNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004797	thymidine kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005049	nuclear export signal receptor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005663	DNA replication factor C complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005680	anaphase-promoting complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006476	protein deacetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016575	histone deacetylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019206	nucleoside kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035601	protein deacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0042575	DNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043625	delta DNA polymerase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098732	macromolecule deacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140104	molecular carrier activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140612	DNA damage sensor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013507	DNA_mismatch_S5_2-like	229	347
IPR014790	MutL_C	727	885

External Links

No external refs found!

Lsat_1_v5_gn_5_190601.1 (AtPMS1, PMS1)

Expression Profile

Co-expression Networks

Functional Annotation