Lsat_1_v5_gn_5_110420.1 (EMB1080)

Aliases : EMB1080

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome

Gene families : OG0000756 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000756_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_110420.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
Bra009706	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra018026	EMB1080	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra026484	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.12	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra029381	RPS11-BETA	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.08	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra029928	EMB1080	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.14	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.05151	EMB1080	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.02206	EMB1080	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_uS17	74	143
IPR032440	Ribosomal_uS17_N	4	72

External Links

No external refs found!

Lsat_1_v5_gn_5_110420.1 (EMB1080)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation