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Aliases : PMH2, ATRH53
Description : group-II intron splicing RNA helicase *(PMH)
Gene families : OG0001750 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001750_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_70780.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003678 | DNA helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003689 | DNA clamp loader activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003724 | RNA helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003972 | RNA ligase (ATP) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004386 | helicase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004819 | glutamine-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005049 | nuclear export signal receptor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005634 | nucleus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005643 | nuclear pore | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005663 | DNA replication factor C complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005730 | nucleolus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005737 | cytoplasm | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006082 | organic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006177 | GMP biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006259 | DNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006281 | DNA repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006302 | double-strand break repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006303 | double-strand break repair via nonhomologous end joining | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006399 | tRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006401 | RNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006402 | mRNA catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006425 | glutaminyl-tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006520 | amino acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006974 | DNA damage response | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0008152 | metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008186 | ATP-dependent activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008452 | RNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009987 | cellular process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019899 | enzyme binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0030515 | snoRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031047 | regulatory ncRNA-mediated gene silencing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0031072 | heat shock protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0031267 | small GTPase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0031968 | organelle outer membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0033554 | cellular response to stress | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034470 | ncRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0034511 | U3 snoRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043038 | amino acid activation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044237 | cellular metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044238 | primary metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0044281 | small molecule metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046037 | GMP metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046907 | intracellular transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048519 | negative regulation of biological process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051020 | GTPase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051641 | cellular localization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051649 | establishment of localization in cell | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051716 | cellular response to stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0071704 | organic substance metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097747 | RNA polymerase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140299 | small molecule sensor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140612 | DNA damage sensor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140664 | ATP-dependent DNA damage sensor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| No external refs found! |