- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RlmN-type rRNA methyltransferase
Gene families : OG0005426 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0005426_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_5880.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_133 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEA | Interproscan |
| MF | GO:0051536 | iron-sulfur cluster binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000049 | tRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004175 | endopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008237 | metallopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019842 | vitamin binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0043190 | ATP-binding cassette (ABC) transporter complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051287 | NAD binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070279 | vitamin B6 binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098533 | ATPase dependent transmembrane transport complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1902495 | transmembrane transporter complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1990351 | transporter complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007197 | rSAM | 217 | 379 |
| No external refs found! |