Bra005749 (RPL4)

Aliases : RPL4

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome

Gene families : OG0000744 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000744_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra005749
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
Bra001302	SAC56	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_67821.1	SAC56	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_141681.1	SAC56	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01766	SAC56	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00569	SAC56	component *(uL4) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016842	amidine-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR025755	Ribos_uL4_C_dom	281	353
IPR002136	Ribosomal_uL4	29	268

External Links

No external refs found!

Bra005749 (RPL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation