Lsat_1_v5_gn_2_89801.1 (RBCL)

Aliases : RBCL

Description : large subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer

Gene families : OG0002254 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002254_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_89801.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_198

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra028087	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.05	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_C0091.00041	RBCL	large subunit of ribulose-1,5-bisphosphat...	0.15	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0015977	carbon fixation	IEA	Interproscan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006091	generation of precursor metabolites and energy	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006811	monoatomic ion transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006812	monoatomic cation transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009539	photosystem II reaction center	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019684	photosynthesis, light reaction	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031647	regulation of protein stability	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042301	phosphate ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042549	photosystem II stabilization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050821	protein stabilization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065008	regulation of biological quality	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000685	RuBisCO_lsu_C	161	469
IPR017443	RuBisCO_lsu_fd_N	31	151

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Lsat_1_v5_gn_2_89801.1 (RBCL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation