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Aliases : CRR4
Description : RNA editing factor *(CRR4)
Gene families : OG0020811 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra004903 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_258 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003674 | molecular_function | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003774 | cytoskeletal motor activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004356 | glutamine synthetase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004664 | prephenate dehydratase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004751 | ribose-5-phosphate isomerase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004834 | tryptophan synthase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004853 | uroporphyrinogen decarboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006072 | glycerol-3-phosphate metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006082 | organic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006520 | amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006541 | glutamine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006542 | glutamine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006568 | tryptophan metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006576 | biogenic amine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006586 | indolalkylamine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006779 | porphyrin-containing compound biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006801 | superoxide metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008150 | biological_process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008152 | metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008652 | amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009052 | pentose-phosphate shunt, non-oxidative branch | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009072 | aromatic amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009073 | aromatic amino acid family biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009094 | L-phenylalanine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009095 | aromatic amino acid family biosynthetic process, prephenate pathway | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0009521 | photosystem | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0009523 | photosystem II | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009987 | cellular process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0015267 | channel activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0015979 | photosynthesis | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016209 | antioxidant activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016211 | ammonia ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016829 | lyase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016836 | hydro-lyase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0019898 | extrinsic component of membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0022803 | passive transmembrane transporter activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0042254 | ribosome biogenesis | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0042430 | indole-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043169 | cation binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044237 | cellular metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046168 | glycerol-3-phosphate catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046434 | organophosphate catabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0046872 | metal ion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0047952 | glycerol-3-phosphate dehydrogenase [NAD(P)+] activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0052646 | alditol phosphate metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0055085 | transmembrane transport | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0110165 | cellular anatomical entity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1902223 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:1990204 | oxidoreductase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | 397 | 421 |
| IPR002885 | Pentatricopeptide_rpt | 95 | 124 |
| IPR002885 | Pentatricopeptide_rpt | 167 | 192 |
| IPR002885 | Pentatricopeptide_rpt | 228 | 258 |
| IPR002885 | Pentatricopeptide_rpt | 195 | 223 |
| IPR002885 | Pentatricopeptide_rpt | 260 | 289 |
| IPR046848 | E_motif | 539 | 601 |
| IPR002885 | Pentatricopeptide_rpt | 425 | 469 |
| IPR002885 | Pentatricopeptide_rpt | 319 | 367 |
| No external refs found! |