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Description : component *(uS12) of small ribosomal-subunit (SSU) proteome
Gene families : OG0000545 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000545_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_109600.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bra001300 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Bra005745 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Bra028856 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.07 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Bra034077 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Mp2g08680.1 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.01 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_C0010.00024 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.08 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
| Spov3_chr6.01079 | No alias | component *(uS12) of small ribosomal-subunit (SSU) proteome | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003743 | translation initiation factor activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008097 | 5S rRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019843 | rRNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0031369 | translation initiation factor binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0045182 | translation regulator activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006032 | Ribosomal_uS12 | 31 | 141 |
| No external refs found! |