Lsat_1_v5_gn_1_125380.1 (ROS4, IDM1)

Aliases : ROS4, IDM1

Description : GeBP-type transcription factor

Gene families : OG0040228 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_125380.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_191

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000154	rRNA modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003950	NAD+ ADP-ribosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005956	protein kinase CK2 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007062	sister chromatid cohesion	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043189	H4/H2A histone acetyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007592	GEBP	145	240

External Links

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Lsat_1_v5_gn_1_125380.1 (ROS4, IDM1)

Expression Profile

Co-expression Networks

Functional Annotation