Bra040138 (emb2171, RPL23)

Aliases : emb2171, RPL23

Description : component *(uL14) of large ribosomal-subunit (LSU) proteome

Gene families : OG0001583 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001583_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra040138
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_235

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_5_183820.1	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01420	emb2171, RPL23	component *(uL14) of large ribosomal-subunit (LSU) proteome	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004568	chitinase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006026	aminoglycan catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006030	chitin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006032	chitin catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006040	amino sugar metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008061	chitin binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046348	amino sugar catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_uL14	22	140

External Links

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Bra040138 (emb2171, RPL23)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation