Bra038231 (EIF4A-III, RH2)

Aliases : EIF4A-III, RH2

Description : helicase component *(eIF4A3) of RNA quality control Exon Junction complex

Gene families : OG0003996 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003996_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra038231
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_279

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031011	Ino80 complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0097346	INO80-type complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	60	222
IPR001650	Helicase_C	261	369

External Links

No external refs found!

Bra038231 (EIF4A-III, RH2)

Expression Profile

Co-expression Networks

Functional Annotation