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  5. Bra034831

Bra034831 (CASP2)


Aliases : CASP2

Description : lignin polymerization scaffold protein *(CASP)


Gene families : OG0006444 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra034831
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Bra001409 CASP2 lignin polymerization scaffold protein *(CASP) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019901 protein kinase binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0020037 heme binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0033176 proton-transporting V-type ATPase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042325 regulation of phosphorylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042545 cell wall modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045229 external encapsulating structure organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0052689 carboxylic ester hydrolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071554 cell wall organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071555 cell wall organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006702 CASP_dom 38 186
No external refs found!