Bra032979 (TSO2, ATTSO2)

Aliases : TSO2, ATTSO2

Description : small subunit of ribonucleoside-diphosphate reductase heterodimer

Gene families : OG0001187 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra032979
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_2

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009262	deoxyribonucleotide metabolic process	None	Extended
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000796	condensin complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003674	molecular_function	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003896	DNA primase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006269	DNA replication, synthesis of RNA primer	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006275	regulation of DNA replication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007076	mitotic chromosome condensation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030261	chromosome condensation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033043	regulation of organelle organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033044	regulation of chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034061	DNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0042555	MCM complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044092	negative regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051095	regulation of helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051097	negative regulation of helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140657	ATP-dependent activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901265	nucleoside phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1903047	mitotic cell cycle process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905774	regulation of DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:2001251	negative regulation of chromosome organization	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000358	RNR_small_fam	16	283

External Links

No external refs found!

Bra032979 (TSO2, ATTSO2)

Expression Profile

Co-expression Networks

Functional Annotation