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  5. Bra003189

Bra003189 (EXT16)


Aliases : EXT16

Description : classical extensin


Gene families : OG0002181 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra003189
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_49


Type GO Term Name Evidence Source
MF GO:0005199 structural constituent of cell wall IEA Interproscan
BP GO:0009664 plant-type cell wall organization IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004601 peroxidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016209 antioxidant activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016872 intramolecular lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030695 GTPase regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006706 Extensin_dom 390 439
IPR006706 Extensin_dom 541 590
IPR006706 Extensin_dom 440 489
IPR006706 Extensin_dom 263 313
IPR006706 Extensin_dom 875 925
IPR006706 Extensin_dom 237 288
IPR006706 Extensin_dom 515 565
IPR006706 Extensin_dom 800 849
IPR006706 Extensin_dom 566 615
IPR006706 Extensin_dom 314 363
IPR006706 Extensin_dom 133 184
IPR006706 Extensin_dom 211 262
IPR006706 Extensin_dom 415 464
IPR006706 Extensin_dom 185 236
IPR006706 Extensin_dom 339 389
IPR006706 Extensin_dom 490 540
IPR006706 Extensin_dom 289 338
IPR006706 Extensin_dom 159 210
IPR006706 Extensin_dom 364 414
IPR006706 Extensin_dom 699 749
IPR006706 Extensin_dom 725 774
IPR006706 Extensin_dom 750 799
IPR006706 Extensin_dom 465 514
IPR006706 Extensin_dom 825 874
No external refs found!