Bra031602 (ELONGATION FACTOR-TU FAMILY)

Aliases : ELONGATION FACTOR-TU FAMILY

Description : aminoacyl-tRNA binding factor *(eEF1A))

Gene families : OG0000112 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra031602
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
Bra002483	ELONGATION...	aminoacyl-tRNA binding factor *(eEF1A))	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_97861.1	EF1alpha	aminoacyl-tRNA binding factor *(eEF1A))	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp6g00930.1	ELONGATION...	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp6g00940.1	No alias	not classified	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp6g00950.1	ELONGATION...	aminoacyl-tRNA binding factor *(eEF1A))	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03388	ELONGATION...	aminoacyl-tRNA binding factor *(eEF1A))	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03391	EF1alpha	aminoacyl-tRNA binding factor *(eEF1A))	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03393	ELONGATION...	aminoacyl-tRNA binding factor *(eEF1A))	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03396	ELONGATION...	aminoacyl-tRNA binding factor *(eEF1A))	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003989	acetyl-CoA carboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004568	chitinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006026	aminoglycan catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006030	chitin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006032	chitin catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006040	amino sugar metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008061	chitin binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008150	biological_process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016421	CoA carboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016885	ligase activity, forming carbon-carbon bonds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042255	ribosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042256	cytosolic ribosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043603	amide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046348	amino sugar catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070925	organelle assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000795	T_Tr_GTP-bd_dom	7	222
IPR004161	EFTu-like_2	248	313
IPR004160	Transl_elong_EFTu/EF1A_C	322	429

External Links

No external refs found!

Bra031602 (ELONGATION FACTOR-TU FAMILY)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation