Bra029780 (SAC56)


Aliases : SAC56

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome


Gene families : OG0000744 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000744_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra029780
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Bra001302 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_2_67821.1 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.18 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_141681.1 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.16 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01766 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00569 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004055 argininosuccinate synthase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006525 arginine metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006526 arginine biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009064 glutamine family amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR025755 Ribos_uL4_C_dom 281 353
IPR002136 Ribosomal_uL4 29 268
No external refs found!