Aliases : SAC56
Description : component *(uL4) of large ribosomal-subunit (LSU) proteome
Gene families : OG0000744 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000744_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa (Bra) PCC: Bra029780 | |
Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_20 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bra001302 | SAC56 | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.03 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Lsat_1_v5_gn_2_67821.1 | SAC56 | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.18 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Lsat_1_v5_gn_4_141681.1 | SAC56 | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.16 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr2.01766 | SAC56 | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.1 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol | |
Spov3_chr6.00569 | SAC56 | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.09 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Brassica rapa GO terms from Neighborhoods |
MF | GO:0003723 | RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
MF | GO:0004055 | argininosuccinate synthase activity | IEP | Brassica rapa GO terms from Neighborhoods |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Brassica rapa GO terms from Neighborhoods |
BP | GO:0006525 | arginine metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
BP | GO:0006526 | arginine biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
MF | GO:0008097 | 5S rRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
MF | GO:0019843 | rRNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
CC | GO:0030684 | preribosome | IEP | Brassica rapa GO terms from Neighborhoods |
CC | GO:0032040 | small-subunit processome | IEP | Brassica rapa GO terms from Neighborhoods |
No external refs found! |