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Aliases : PDM3, EMB3140
Description : plastidial splicing factor *(PDM3)
Gene families : OG0021638 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa (Bra) PCC: Bra028448 | |
| Cluster | Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_130 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004518 | nuclease activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004525 | ribonuclease III activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004527 | exonuclease activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004655 | porphobilinogen synthase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0004827 | proline-tRNA ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0005525 | GTP binding | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0005737 | cytoplasm | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006082 | organic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006260 | DNA replication | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006399 | tRNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006479 | protein methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006520 | amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0008213 | protein alkylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009058 | biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0009317 | acetyl-CoA carboxylase complex | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016421 | CoA carboxylase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016570 | histone modification | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0016571 | histone methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016874 | ligase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018022 | peptidyl-lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0018024 | obsolete histone lysine N-methyltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| CC | GO:0019867 | outer membrane | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0034061 | DNA polymerase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0034968 | histone lysine methylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0035596 | methylthiotransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043038 | amino acid activation | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043039 | tRNA aminoacylation | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044281 | small molecule metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:0140657 | ATP-dependent activity | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Brassica rapa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Brassica rapa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Brassica rapa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | 255 | 299 |
| IPR002885 | Pentatricopeptide_rpt | 150 | 197 |
| IPR002885 | Pentatricopeptide_rpt | 396 | 439 |
| IPR002885 | Pentatricopeptide_rpt | 468 | 495 |
| IPR002885 | Pentatricopeptide_rpt | 223 | 253 |
| IPR002885 | Pentatricopeptide_rpt | 609 | 631 |
| IPR002885 | Pentatricopeptide_rpt | 535 | 563 |
| IPR002885 | Pentatricopeptide_rpt | 573 | 599 |
| IPR002885 | Pentatricopeptide_rpt | 313 | 374 |
| No external refs found! |