Bra028392 (AtFTSH3, FTSH3)

Aliases : AtFTSH3, FTSH3

Description : component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers

Gene families : OG0007177 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra028392
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_211

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004176	ATP-dependent peptidase activity	IEA	Interproscan
MF	GO:0004222	metalloendopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008237	metallopeptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003684	damaged DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004356	glutamine synthetase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004357	glutamate-cysteine ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004474	malate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006097	glyoxylate cycle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006281	DNA repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006284	base-excision repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006289	nucleotide-excision repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006541	glutamine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006542	glutamine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006974	DNA damage response	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016211	ammonia ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016880	acid-ammonia (or amide) ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033554	cellular response to stress	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0040008	regulation of growth	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045927	positive regulation of growth	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046487	glyoxylate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048518	positive regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051716	cellular response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	363	494
IPR000642	Peptidase_M41	577	759
IPR011546	Pept_M41_FtsH_extracell	156	249
IPR041569	AAA_lid_3	524	562

External Links

No external refs found!

Bra028392 (AtFTSH3, FTSH3)

Expression Profile

Co-expression Networks

Functional Annotation