GO:0019205
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  5. Bra027371

Bra027371 (NUP107)


Aliases : NUP107

Description : scaffold nucleoporin of nuclear pore complex *(NUP107)


Gene families : OG0004038 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004038_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra027371
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_181


Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003924 GTPase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005839 proteasome core complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006012 galactose metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006465 signal peptide processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019781 NEDD8 activating enzyme activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0032993 protein-DNA complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045116 protein neddylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0070569 uridylyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007252 Nup84/Nup107 193 857
No external refs found!