Bra025326 (MDR13, ABCB15)

Aliases : MDR13, ABCB15

Description : subfamily ABCB transporter

Gene families : OG0001151 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001151_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra025326
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_82

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004668	protein-arginine deiminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006576	biogenic amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006595	polyamine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006596	polyamine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009308	amine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009309	amine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009445	putrescine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009446	putrescine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022834	ligand-gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022836	gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0022839	monoatomic ion gated channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030118	clathrin coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030125	clathrin vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030132	clathrin coat of coated pit	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042401	biogenic amine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1018	1168
IPR003439	ABC_transporter-like_ATP-bd	381	526
IPR011527	ABC1_TM_dom	36	303
IPR011527	ABC1_TM_dom	678	946

External Links

No external refs found!

Bra025326 (MDR13, ABCB15)

Expression Profile

Co-expression Networks

Functional Annotation