Bra025211

Description : not classified

Gene families : OG0012928 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra025211
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_137

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004484	mRNA guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005783	endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006370	7-methylguanosine mRNA capping	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006397	mRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006473	protein acetylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006474	N-terminal protein amino acid acetylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006873	intracellular monoatomic ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006874	intracellular calcium ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008192	RNA guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008380	RNA splicing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009452	7-methylguanosine RNA capping	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016311	dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0017196	N-terminal peptidyl-methionine acetylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018206	peptidyl-methionine modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019725	cellular homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030003	intracellular monoatomic cation homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031365	N-terminal protein amino acid modification	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031414	N-terminal protein acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031417	NatC complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032469	endoplasmic reticulum calcium ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0036260	RNA capping	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042592	homeostatic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048878	chemical homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050801	monoatomic ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055080	monoatomic cation homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055082	intracellular chemical homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070568	guanylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0098771	inorganic ion homeostasis	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	1056	1131
IPR011545	DEAD/DEAH_box_helicase_dom	524	674
IPR003029	S1_domain	214	286
IPR007502	Helicase-assoc_dom	910	998
IPR001650	Helicase_C	716	848

External Links

No external refs found!

Bra025211

Expression Profile

Co-expression Networks

Functional Annotation