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  5. Bra023114

Bra023114 (RS2Z33, RSZ33,...)


Aliases : RS2Z33, RSZ33, ATRSZ33, AT-RS2Z33

Description : RNA splicing factor *(RSZ32/33)


Gene families : OG0004817 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004817_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra023114
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr6.00332 RS2Z33, RSZ33,... RNA splicing factor *(RSZ32/33) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000075 cell cycle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
MF GO:0000166 nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000313 organellar ribosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Brassica rapa GO terms from Neighborhoods
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005761 mitochondrial ribosome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006361 transcription initiation at RNA polymerase I promoter IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007088 regulation of mitotic nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007094 mitotic spindle assembly checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010948 negative regulation of cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016071 mRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016410 N-acyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0017053 transcription repressor complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017070 U6 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018130 heterocycle biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019107 myristoyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019438 aromatic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Brassica rapa GO terms from Neighborhoods
MF GO:0030623 U5 snRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0031072 heat shock protein binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0031577 spindle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032774 RNA biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033045 regulation of sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033046 negative regulation of sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0033048 negative regulation of mitotic sister chromatid segregation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0035145 exon-exon junction complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043168 anion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045786 negative regulation of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045839 negative regulation of mitotic nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045841 negative regulation of mitotic metaphase/anaphase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045930 negative regulation of mitotic cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051783 regulation of nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051983 regulation of chromosome segregation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051985 negative regulation of chromosome segregation IEP Brassica rapa GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071173 spindle assembly checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071174 mitotic spindle checkpoint signaling IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097367 carbohydrate derivative binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140223 general transcription initiation factor activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140657 ATP-dependent activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901265 nucleoside phosphate binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901362 organic cyclic compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901988 negative regulation of cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901991 negative regulation of mitotic cell cycle phase transition IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902100 negative regulation of metaphase/anaphase transition of cell cycle IEP Brassica rapa GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905818 regulation of chromosome separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:1905819 negative regulation of chromosome separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:2000816 negative regulation of mitotic sister chromatid separation IEP Brassica rapa GO terms from Neighborhoods
BP GO:2001251 negative regulation of chromosome organization IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 34 95
IPR001878 Znf_CCHC 142 159
IPR001878 Znf_CCHC 121 136
No external refs found!