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  5. Bra021909

Bra021909 (DEG11, LHCB1.4, LHB1B1)


Aliases : DEG11, LHCB1.4, LHB1B1

Description : component *(LHCb1/2/3) of LHC-II complex


Gene families : OG0000370 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra021909
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Bra010807 LHCB1.3, AB140,... component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28800.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28820.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_28860.1 CAB3, LHCB1.2, AB180 component *(LHCb1/2/3) of LHC-II complex 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009538 photosystem I reaction center IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 1 127
No external refs found!