Bra002116 (ATCIMS, METS1, ATMETS, ATMS1)

Aliases : ATCIMS, METS1, ATMETS, ATMS1

Description : methyl-tetrahydrofolate-dependent methionine synthase. EC_2.1 transferase transferring one-carbon group

Gene families : OG0000631 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000631_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra002116
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_175

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_6_32121.1	ATCIMS, METS1,...	EC_2.1 transferase transferring one-carbon group....	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03909	ATCIMS, METS1,...	EC_2.1 transferase transferring one-carbon group....	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008172	S-methyltransferase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0008652	amino acid biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004107	chorismate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004590	orotidine-5'-phosphate decarboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005875	microtubule associated complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006206	pyrimidine nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006629	lipid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015939	pantothenate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015940	pantothenate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016829	lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019856	pyrimidine nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030286	dynein complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046112	nucleobase biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013215	Cbl-indep_Met_Synth_N	3	316
IPR002629	Met_Synth_C/arc	432	755

External Links

No external refs found!

Bra002116 (ATCIMS, METS1, ATMETS, ATMS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation