Bra018264 (FIONA, SYCO ARATH)

Aliases : FIONA, SYCO ARATH

Description : cysteine-tRNA ligase. EC_6.1 ligase forming carbon-oxygen bond

Gene families : OG0021169 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra018264
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_130

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004817	cysteine-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006423	cysteinyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004525	ribonuclease III activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005525	GTP binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006605	protein targeting	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019001	guanyl nucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033365	protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045047	protein targeting to ER	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051668	localization within membrane	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072594	establishment of protein localization to organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072657	protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015273	Cys-tRNA-synt_Ia_DALR	348	409
IPR032678	tRNA-synt_1_cat_dom	8	304

External Links

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Bra018264 (FIONA, SYCO ARATH)

Expression Profile

Co-expression Networks

Functional Annotation