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  5. Bra017196

Bra017196


Description : not classified


Gene families : OG0003088 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra017196
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004455 ketol-acid reductoisomerase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005215 transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006575 cellular modified amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006631 fatty acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006633 fatty acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006694 steroid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006766 vitamin metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006767 water-soluble vitamin metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006813 potassium ion transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008202 steroid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008610 lipid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009058 biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009081 branched-chain amino acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009110 vitamin biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015079 potassium ion transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015931 nucleobase-containing compound transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015939 pantothenate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015940 pantothenate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016053 organic acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016229 steroid dehydrogenase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016790 thiolester hydrolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016836 hydro-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019752 carboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022857 transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032787 monocarboxylic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043436 oxoacid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043603 amide metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044249 cellular biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044283 small molecule biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046394 carboxylic acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0055085 transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071805 potassium ion transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
CC GO:0098588 bounding membrane of organelle IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901264 carbohydrate derivative transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901576 organic substance biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901702 salt transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 189 237
IPR002885 Pentatricopeptide_rpt 291 324
IPR002885 Pentatricopeptide_rpt 426 471
IPR002885 Pentatricopeptide_rpt 325 367
IPR046848 E_motif 543 603
IPR002885 Pentatricopeptide_rpt 398 423
IPR002885 Pentatricopeptide_rpt 86 113
IPR002885 Pentatricopeptide_rpt 499 523
No external refs found!