Coexpression cluster: Cluster_99 (Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008270 zinc ion binding 20.97% (39/186) 4.18 0.0 0.0
GO:0046914 transition metal ion binding 22.04% (41/186) 3.18 0.0 0.0
GO:0043169 cation binding 22.04% (41/186) 2.42 0.0 0.0
GO:0046872 metal ion binding 22.04% (41/186) 2.43 0.0 0.0
GO:0043167 ion binding 27.42% (51/186) 1.31 0.0 0.0
GO:0016579 protein deubiquitination 3.76% (7/186) 4.54 0.0 1e-06
GO:0070646 protein modification by small protein removal 3.76% (7/186) 4.54 0.0 1e-06
GO:0004843 cysteine-type deubiquitinase activity 3.76% (7/186) 4.44 0.0 1e-06
GO:0101005 deubiquitinase activity 3.76% (7/186) 4.44 0.0 1e-06
GO:0019783 ubiquitin-like protein peptidase activity 3.76% (7/186) 4.44 0.0 1e-06
GO:0070647 protein modification by small protein conjugation or removal 4.3% (8/186) 3.27 2e-06 4.9e-05
GO:0000152 nuclear ubiquitin ligase complex 1.61% (3/186) 6.37 5e-06 9.7e-05
GO:0031461 cullin-RING ubiquitin ligase complex 1.61% (3/186) 6.37 5e-06 9.7e-05
GO:0005680 anaphase-promoting complex 1.61% (3/186) 6.37 5e-06 9.7e-05
GO:0043687 post-translational protein modification 4.3% (8/186) 3.03 7e-06 0.000128
GO:0006508 proteolysis 6.45% (12/186) 2.23 1.2e-05 0.000195
GO:0000151 ubiquitin ligase complex 1.61% (3/186) 5.91 1.5e-05 0.000233
GO:0008234 cysteine-type peptidase activity 3.76% (7/186) 3.12 1.8e-05 0.000265
GO:0097602 cullin family protein binding 1.08% (2/186) 7.78 2.1e-05 0.000274
GO:0031145 anaphase-promoting complex-dependent catabolic process 1.08% (2/186) 7.78 2.1e-05 0.000274
GO:0008233 peptidase activity 5.38% (10/186) 2.07 0.000154 0.001955
GO:1990234 transferase complex 2.15% (4/186) 3.46 0.0005 0.006044
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 1.08% (2/186) 5.78 0.000566 0.006268
GO:0010498 proteasomal protein catabolic process 1.08% (2/186) 5.78 0.000566 0.006268
GO:0030163 protein catabolic process 1.08% (2/186) 5.46 0.000904 0.009613
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_5 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_50 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_68 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_112 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_131 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_163 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_170 0.006 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_229 0.008 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Brassica rapa Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm) Cluster_256 0.043 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Lactuca sativa Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm) Cluster_104 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_44 0.007 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Spinacia oleracea Spinacia oleracea (Sol) Coexpression Clusters (HCCA Algorithm) Cluster_171 0.009 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol Compare
Sequences (186) (download table)

InterPro Domains

GO Terms

Family Terms